Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 4.0e-312 1073.9 586 100.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 2.8e-178 629.4 663 59.7
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 2.9e-175 619.4 660 59.7
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 7.9e-117 425.2 669 41.1
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.8e-108 397.5 662 41.1
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 3.9e-108 396.4 672 41.4
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-107 394.8 288 73.3
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.9e-107 394.0 662 40.9
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 2.5e-107 393.7 684 39.9
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 3.3e-107 393.3 292 72.6
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 9.7e-107 391.7 667 40.2
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.7e-106 391.0 659 40.1
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 2.2e-106 390.6 661 39.9
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.1e-105 386.7 665 40.8
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 7.7e-104 382.1 671 38.7
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 5.0e-103 379.4 659 39.2
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.0e-99 367.5 667 38.7
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 5.7e-99 365.9 651 38.4
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.2e-98 364.0 625 38.4
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 4.8e-98 362.8 643 39.5
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.4e-97 360.5 677 39.3
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.5e-96 357.8 629 39.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.7e-95 354.4 639 39.1
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 2.2e-95 354.0 676 37.9
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 8.5e-95 352.1 656 38.0
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.1e-94 351.7 653 39.5
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.2e-94 350.1 653 39.7
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 7.2e-94 349.0 666 38.4
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.7e-93 347.1 663 38.9
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 8.0e-93 345.5 658 37.7
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.0e-92 345.1 658 38.1
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.0e-92 343.6 658 37.4
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 3.0e-92 343.6 650 38.3
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 5.2e-92 342.8 643 37.2
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 6.7e-92 342.4 680 38.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 8.8e-92 342.0 648 39.2
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 8.8e-92 342.0 656 37.3
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.6e-91 340.5 682 38.4
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 2.6e-91 340.5 646 39.2
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 2.6e-91 340.5 614 39.3
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 7.4e-91 339.0 653 36.9
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.7e-90 337.8 675 36.1
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 8.2e-90 335.5 662 37.0
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.1e-89 335.1 668 35.9
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.1e-89 335.1 641 39.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 2.4e-89 334.0 640 38.8
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.2e-88 331.6 638 38.2
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.6e-88 330.5 616 39.3
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-86 325.1 638 38.1
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 1.1e-86 325.1 652 36.7
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 3.2e-86 323.6 529 42.9
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 4.2e-86 323.2 656 35.5
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.2e-86 323.2 627 37.2
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.5e-86 322.8 638 37.9
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 7.2e-86 322.4 624 36.4
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 2.7e-85 320.5 638 37.8
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-84 318.5 664 36.7
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.8e-84 317.8 651 38.1
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 5.2e-84 316.2 627 35.1
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 8.8e-84 315.5 649 38.1
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.2e-82 310.8 701 34.4
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 6.3e-82 309.3 620 35.6
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 6.3e-82 309.3 653 36.1
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.1e-81 308.5 679 34.0
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.2e-80 305.1 500 39.2
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 2.7e-80 303.9 634 35.2
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 3.5e-80 303.5 476 41.4
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 3.5e-80 303.5 548 38.9
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.0e-79 302.0 647 36.2
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.0e-79 302.0 554 39.9
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 8.5e-79 298.9 655 36.6
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.2e-78 296.6 656 35.1
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 9.4e-78 295.4 598 38.5
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 1.4e-76 291.6 674 34.6
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 5.2e-76 289.7 635 33.5
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 9.8e-75 285.4 624 35.4
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 4.1e-73 280.0 291 48.8
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.5e-72 276.6 634 34.2
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.5e-70 271.6 496 36.9
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.5e-70 270.8 608 34.0
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.0e-68 265.4 273 51.6
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.4e-68 265.0 293 50.5
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.3e-68 264.2 237 57.4
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 6.8e-68 262.7 278 50.0
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 8.9e-68 262.3 651 33.8
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.2e-67 261.9 659 33.1
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 9.8e-67 258.8 637 32.7
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 4.9e-66 256.5 653 33.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.9e-66 256.5 663 33.0
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.4e-65 254.2 662 33.4
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 9.2e-65 252.3 653 32.5
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 7.8e-64 249.2 655 32.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 3.8e-63 246.9 660 32.0
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 6.6e-63 246.1 657 33.0
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 6.1e-61 239.6 232 54.3
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.4e-60 238.4 281 48.4
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.0e-60 237.3 275 49.5
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.4e-59 233.8 613 31.0
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 4.4e-59 233.4 419 39.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 5.8e-59 233.0 665 31.7
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.7e-58 231.5 658 31.8
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.6e-56 224.9 250 49.6
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 6.0e-56 223.0 524 33.6
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 7.3e-54 216.1 487 34.3
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.6e-53 214.9 519 33.9
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 6.2e-53 213.0 620 29.0
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.1e-52 212.2 532 32.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 2.3e-52 211.1 636 30.5
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 5.8e-51 206.5 607 29.3
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-49 202.2 582 32.1
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.5e-46 191.0 260 43.8
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.2e-45 188.7 438 32.6
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 2.0e-43 181.4 276 39.1
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 1.1e-41 175.6 185 50.3
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 2.1e-40 171.4 237 44.3
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 6.0e-40 169.9 181 47.0
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.2e-35 155.6 464 31.9
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.8e-34 150.6 153 54.2
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 3.3e-30 137.5 173 41.0
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 5.6e-30 136.7 257 31.1
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.6e-27 126.3 409 29.8
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 4.2e-25 120.6 170 37.1
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.2e-24 119.0 120 49.2
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.7e-24 117.9 250 38.0
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.3e-23 115.5 141 44.7
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.3e-23 115.5 98 56.1
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 2.3e-23 114.8 111 49.5
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 6.6e-23 113.2 187 36.9
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 3.3e-22 110.9 268 29.9
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.1e-21 106.3 123 46.3
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 2.4e-20 104.8 166 50.0
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.0e-19 101.7 295 32.5
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.6e-19 101.3 82 57.3
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.9e-19 99.4 235 34.5
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 6.4e-18 96.7 250 34.8
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.9e-17 95.1 302 28.8
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 1.5e-14 85.5 184 32.1
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.3e-14 84.3 238 30.7
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 9.6e-14 82.8 330 29.1
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 8.1e-13 79.7 77 48.1
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.1e-12 79.3 205 32.7
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 5.3e-12 77.0 163 37.4
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 9.0e-12 76.3 149 35.6
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 9.0e-12 76.3 119 37.0
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.4e-11 74.3 346 31.5
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.5e-11 73.9 74 52.7
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.3e-10 72.4 77 50.6
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 1.3e-10 72.4 72 55.6
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.2e-08 65.9 49 63.3
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 3.5e-08 64.3 118 31.4
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.6e-08 63.9 68 51.5
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.3e-07 62.4 249 32.9
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 1.8e-07 62.0 49 57.1
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 1.8e-07 62.0 152 32.2
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 1.8e-07 62.0 182 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 5.6e-06 57.0 302 26.2
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 5.6e-06 57.0 191 29.3


User provided reference genes

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