Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 3.4e-189 664.8 337 100.0
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.9e-184 649.0 338 98.8
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.1e-99 367.5 345 55.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.6e-98 363.6 346 55.8
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.1e-97 360.9 345 55.4
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.0e-97 359.0 345 57.1
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 8.9e-97 357.8 345 56.5
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.6e-96 356.3 343 57.4
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.6e-96 356.3 346 55.2
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.1e-94 349.0 347 54.5
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.1e-94 349.0 346 51.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 7.8e-93 344.7 345 54.5
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.0e-92 344.4 345 52.2
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.7e-92 343.6 346 51.4
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-91 339.7 346 54.3
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.2e-90 337.4 344 54.1
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.6e-90 337.0 344 51.7
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.1e-90 336.7 344 51.7
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.8e-90 336.3 347 51.6
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.6e-90 335.9 283 60.1
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 4.7e-90 335.5 346 53.5
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.7e-90 335.5 346 52.9
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 6.2e-90 335.1 345 54.5
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-89 334.0 344 51.2
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 3.1e-89 332.8 345 52.2
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.1e-89 332.8 344 52.6
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.5e-88 330.5 352 51.7
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.4e-88 329.3 345 50.7
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.4e-88 329.3 345 52.8
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 9.9e-88 327.8 339 51.6
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 9.9e-88 327.8 357 52.4
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 2.9e-87 326.2 355 50.7
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.1e-86 324.3 345 51.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.2e-86 322.8 337 51.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.1e-86 322.4 344 52.9
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.1e-86 322.4 344 52.9
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.4e-86 322.0 346 51.4
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 5.4e-86 322.0 348 50.9
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.7e-85 319.7 337 50.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-84 317.4 339 51.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.3e-84 316.6 338 51.2
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 3.9e-84 315.8 346 50.3
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.5e-83 313.9 344 48.0
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.5e-83 313.2 344 48.3
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.6e-82 309.3 344 47.7
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.4e-81 307.4 345 51.0
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.4e-81 306.6 348 49.7
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.4e-81 306.6 347 50.4
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.0e-80 303.5 283 56.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.0e-80 303.5 345 51.3
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.4e-80 302.8 344 48.5
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 3.4e-80 302.8 345 51.0
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.8e-80 302.0 337 51.0
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.3e-79 300.8 345 48.1
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.3e-79 300.8 345 51.6
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 9.3e-78 294.7 346 47.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 9.3e-78 294.7 336 48.2
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.5e-77 292.7 345 47.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.7e-76 290.4 339 47.5
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 6.6e-76 288.5 355 48.2
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.5e-75 287.3 311 48.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.6e-74 283.9 312 48.7
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.1e-74 283.5 346 45.7
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 3.6e-74 282.7 347 47.3
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 4.8e-74 282.3 327 46.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 6.2e-74 282.0 345 46.4
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.1e-74 281.6 312 49.0
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-73 281.2 325 50.2
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.8e-73 280.4 349 44.4
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.8e-73 280.4 346 46.5
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.4e-73 280.0 345 46.1
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.0e-73 279.3 311 47.6
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 5.3e-73 278.9 347 45.0
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 6.9e-73 278.5 348 44.3
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 9.0e-73 278.1 347 48.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 9.0e-73 278.1 346 45.7
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-72 277.7 328 49.7
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.5e-72 277.3 345 45.8
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.0e-72 276.9 349 43.8
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 7.6e-72 275.0 347 46.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 7.6e-72 275.0 346 46.8
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 1.3e-71 274.2 284 49.6
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.7e-71 273.9 348 44.8
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.7e-71 273.9 348 45.1
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.9e-71 272.3 337 44.5
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 4.9e-71 272.3 328 44.8
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.1e-70 271.2 348 43.4
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.1e-70 271.2 347 43.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.4e-70 270.8 346 46.0
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 2.4e-70 270.0 329 45.6
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.2e-70 269.6 341 46.3
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 5.4e-70 268.9 335 48.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 5.4e-70 268.9 347 45.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.5e-69 266.2 348 44.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.5e-69 266.2 353 46.2
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.0e-68 264.6 349 46.7
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.3e-68 263.5 335 46.6
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.0e-68 263.1 283 49.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.6e-68 261.9 322 46.0
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.1e-67 261.2 345 45.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.5e-67 260.8 346 44.5
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.3e-67 259.2 340 43.8
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.1e-66 256.9 345 45.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.8e-66 256.5 345 42.9
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 3.6e-66 256.1 347 44.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.0e-65 252.7 337 44.8
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 9.0e-65 251.5 345 42.3
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 4.5e-64 249.2 314 47.5
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 7.6e-64 248.4 333 44.1
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 9.9e-64 248.1 349 43.0
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.2e-63 246.9 339 42.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.4e-63 245.4 334 43.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.4e-62 244.2 343 41.7
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.4e-62 244.2 290 47.6
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.9e-62 243.8 344 44.8
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.4e-62 243.4 345 41.4
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.4e-62 243.4 278 46.4
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 9.3e-62 241.5 338 43.2
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.2e-61 241.1 345 40.9
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.1e-61 240.4 340 42.4
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.5e-61 239.6 345 40.9
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 4.6e-61 239.2 287 45.6
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.0e-60 238.0 347 43.8
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.8e-60 237.3 348 41.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 8.7e-60 235.0 340 41.5
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.3e-59 233.0 334 43.1
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.1e-58 230.3 280 44.3
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.2e-56 224.6 348 42.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-54 217.2 340 40.0
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.6e-53 212.6 332 40.4
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.7e-50 203.0 200 54.5
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 4.8e-50 202.6 328 37.2
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.3e-50 202.2 276 41.7
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.0e-47 194.9 137 65.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.8e-47 193.0 334 37.4
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 6.5e-47 192.2 256 42.6
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 4.2e-46 189.5 211 46.9
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.3e-44 184.5 137 62.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-43 181.4 129 63.6
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.4e-41 173.7 326 34.7
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.5e-40 171.0 239 40.2
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 3.9e-36 156.4 340 33.5
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.2e-32 144.8 279 35.5
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.3e-28 130.6 279 34.8
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.5e-24 116.7 103 50.5
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 4.4e-19 99.8 133 42.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 9.1e-09 65.5 268 25.0
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 6.5e-07 59.3 206 27.2
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-06 57.4 42 64.3


User provided reference genes

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