Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 5.6e-78 294.7 205 100.0
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 5.3e-60 235.0 184 95.1
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.6e-40 170.2 179 79.9
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.2e-35 154.1 181 74.0
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.0e-34 151.0 181 65.2
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 6.5e-34 148.3 139 74.8
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.5e-33 147.1 139 74.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.5e-33 147.1 137 73.0
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 5.5e-33 145.2 180 70.6
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.1e-32 143.3 143 69.2
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 2.1e-32 143.3 143 69.2
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 2.1e-32 143.3 183 69.9
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 3.6e-32 142.5 143 68.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 3.6e-32 142.5 103 69.9
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 6.1e-32 141.7 144 65.3
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.0e-31 141.0 143 69.9
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.4e-31 140.6 142 67.6
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.4e-31 140.6 180 70.6
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.8e-31 140.2 177 71.8
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.8e-31 140.2 104 69.2
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.8e-31 140.2 145 69.7
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.3e-31 139.8 190 63.7
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.3e-31 139.8 190 63.7
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.3e-31 139.8 177 67.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 5.2e-31 138.7 143 67.8
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.7e-31 138.3 103 68.0
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.7e-31 138.3 179 69.3
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.2e-30 137.5 179 70.9
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 3.3e-30 136.0 104 65.4
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 3.3e-30 136.0 189 67.2
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 4.4e-30 135.6 104 68.3
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 5.7e-30 135.2 143 67.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 9.7e-30 134.4 180 68.9
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 9.7e-30 134.4 104 68.3
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.3e-29 134.0 192 65.1
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.3e-29 134.0 142 53.5
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.7e-29 133.7 183 65.0
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.7e-29 133.7 140 70.0
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 2.2e-29 133.3 122 60.7
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 2.2e-29 133.3 136 69.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 2.2e-29 133.3 104 66.3
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 3.7e-29 132.5 181 69.6
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 3.7e-29 132.5 193 66.3
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.7e-29 132.5 193 66.3
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 4.8e-29 132.1 182 69.8
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 4.8e-29 132.1 182 69.8
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 6.3e-29 131.7 180 70.0
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 6.3e-29 131.7 181 65.7
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 6.3e-29 131.7 183 66.7
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 8.2e-29 131.3 182 68.7
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.1e-28 131.0 136 69.1
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-28 130.6 181 69.6
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.4e-28 129.8 177 66.7
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.4e-28 129.8 177 66.7
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 2.4e-28 129.8 181 61.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.4e-28 129.8 182 68.1
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.4e-28 129.8 141 63.8
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.1e-28 129.4 182 69.2
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 4.1e-28 129.0 178 66.3
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.1e-28 129.0 167 73.1
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 7.0e-28 128.3 104 65.4
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 7.0e-28 128.3 181 61.9
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 9.1e-28 127.9 100 68.0
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 9.1e-28 127.9 101 63.4
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 9.1e-28 127.9 104 66.3
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 9.1e-28 127.9 144 66.0
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 9.1e-28 127.9 141 66.0
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 9.1e-28 127.9 180 56.1
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.2e-27 127.5 239 45.2
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.6e-27 127.1 104 67.3
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.6e-27 127.1 127 70.9
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.0e-27 126.7 167 60.5
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.7e-27 126.3 179 67.6
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.7e-27 126.3 179 67.6
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.5e-27 125.6 142 64.8
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 5.9e-27 125.2 140 65.7
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 5.9e-27 125.2 103 65.0
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 5.9e-27 125.2 182 67.0
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 7.7e-27 124.8 103 64.1
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 7.7e-27 124.8 143 63.6
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.0e-26 124.4 142 64.1
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.3e-26 124.0 145 65.5
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.3e-26 124.0 127 70.1
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.3e-26 124.0 141 65.2
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 2.2e-26 123.2 201 59.7
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 5.0e-26 122.1 145 57.9
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 1.5e-25 120.6 100 61.0
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.9e-25 120.2 168 69.6
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.9e-25 120.2 127 69.3
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.5e-25 119.8 144 58.3
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 7.2e-25 118.2 131 64.9
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 2.7e-24 116.3 142 57.7
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.7e-24 116.3 143 46.2
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 3.6e-24 115.9 146 56.8
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 3.6e-24 115.9 145 57.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 4.7e-24 115.5 178 65.2
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 4.7e-24 115.5 132 66.7
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 6.1e-24 115.2 142 57.0
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 6.1e-24 115.2 143 60.1
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.0e-23 114.4 181 56.9
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 3.0e-23 112.8 140 45.0
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 3.0e-23 112.8 143 44.8
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 5.2e-23 112.1 143 44.8
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 5.2e-23 112.1 143 44.8
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 8.8e-23 111.3 145 53.8
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 8.8e-23 111.3 146 55.5
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.4e-22 109.4 141 47.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 9.8e-22 107.8 128 64.1
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.2e-21 106.7 147 54.4
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 4.8e-21 105.5 147 57.8
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 8.3e-21 104.8 133 42.9
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.0e-20 101.7 178 60.1
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 3.8e-18 95.9 138 58.0
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-17 94.0 141 50.4
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-17 94.0 141 50.4
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.5e-17 94.0 141 50.4
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.5e-17 94.0 141 50.4
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.2e-17 91.7 147 54.4
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.1e-16 90.1 80 83.8
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.4e-15 87.4 106 46.2
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.8e-15 87.0 80 80.0
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 2.3e-15 86.7 140 50.0
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 2.3e-15 86.7 140 50.0
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.3e-15 86.7 133 36.1
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.3e-15 86.7 133 36.1
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.0e-15 85.9 87 51.7
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.8e-15 84.7 79 79.7
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-14 84.0 144 37.5
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-14 84.0 144 37.5
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-14 84.0 144 37.5
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-14 84.0 144 37.5
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 4.4e-14 82.4 141 51.1
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 5.7e-14 82.0 142 35.9
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 5.7e-14 82.0 84 50.0
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.5e-14 81.6 79 78.5
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 6.3e-13 78.6 80 67.5
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 3.1e-12 76.3 130 47.7
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.2e-11 74.3 98 41.8
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.6e-11 73.9 41 75.6
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.8e-11 71.6 40 75.0
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 6.6e-10 68.6 81 44.4
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 8.0e-08 61.6 84 42.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 5.2e-07 58.9 64 43.8
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 2.0e-06 57.0 58 53.4


User provided reference genes

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