Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 0.0e+00 1131.7 574 100.0
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 5.4e-296 1020.4 574 92.0
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 2.6e-258 895.2 575 82.1
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-234 814.7 573 71.4
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.5e-233 810.4 572 71.9
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.5e-233 810.4 573 71.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.5e-233 810.4 572 71.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-228 796.2 571 71.6
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.0e-222 775.4 568 68.8
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.6e-221 772.3 572 69.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.7e-220 768.5 568 69.7
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.0e-218 762.7 569 70.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 5.6e-216 754.6 568 69.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.2e-213 746.9 568 67.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.6e-213 745.7 568 69.2
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 4.4e-213 745.0 568 68.5
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 4.4e-213 745.0 570 69.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.2e-212 742.7 581 66.6
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 8.3e-212 740.7 569 68.2
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.9e-211 739.6 570 69.3
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.2e-211 738.8 581 66.4
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.2e-211 738.8 571 66.0
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 7.0e-211 737.6 570 69.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 4.6e-210 734.9 569 67.0
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 6.6e-209 731.1 568 67.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 9.5e-208 727.2 575 65.9
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.1e-207 726.1 577 64.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 3.6e-207 725.3 581 65.7
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.1e-203 713.8 568 67.4
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.1e-203 713.8 569 65.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.2e-203 712.2 572 65.0
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 9.2e-203 710.7 568 64.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.1e-202 709.5 571 66.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.0e-201 707.2 574 63.2
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.0e-201 707.2 575 64.7
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.7e-201 706.4 574 63.9
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.3e-201 706.1 572 64.2
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.5e-200 703.4 568 65.7
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 9.5e-200 700.7 573 63.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.2e-199 700.3 570 65.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 8.1e-199 697.6 578 63.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 8.1e-199 697.6 577 63.1
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.1e-198 697.2 568 63.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.4e-198 696.8 572 62.4
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.3e-198 696.0 573 63.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.0e-197 693.0 571 65.3
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.9e-196 689.1 572 62.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.9e-196 688.3 572 63.3
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.9e-195 686.4 569 62.0
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.4e-195 686.0 577 60.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.2e-195 684.1 576 62.2
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.2e-194 683.7 573 61.3
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.1e-194 682.9 569 64.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 4.6e-194 681.8 391 90.3
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.3e-193 680.2 571 65.0
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.3e-193 679.5 579 62.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.0e-193 679.1 581 62.5
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.6e-193 677.9 577 62.2
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 8.6e-193 677.6 580 62.1
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-192 676.4 579 62.3
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.9e-192 676.4 581 62.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.9e-192 676.4 576 62.8
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.9e-192 676.4 561 63.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.5e-192 676.0 571 62.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.5e-192 676.0 579 62.5
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 3.3e-192 675.6 574 61.0
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 7.3e-192 674.5 579 62.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 7.3e-192 674.5 579 62.2
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.3e-192 674.5 504 68.5
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 3.6e-191 672.2 580 61.7
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.7e-191 671.8 572 62.6
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.4e-190 670.2 575 60.5
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.4e-190 670.2 568 62.7
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.8e-190 669.8 579 61.5
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 3.1e-190 669.1 579 61.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-190 669.1 572 62.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 8.9e-190 667.5 568 61.8
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.0e-189 666.4 581 59.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 2.2e-188 662.9 431 76.1
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.8e-188 662.1 576 58.7
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.9e-188 661.8 448 71.4
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 8.4e-188 661.0 568 60.7
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 8.4e-188 661.0 568 62.0
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 7.1e-187 657.9 568 60.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 7.1e-187 657.9 574 60.8
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 6.0e-186 654.8 579 58.2
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.3e-185 652.9 571 62.9
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.5e-184 649.4 582 60.1
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 5.6e-184 648.3 574 59.6
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-183 646.7 574 59.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.6e-183 646.7 580 58.4
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 4.8e-183 645.2 574 58.7
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 4.8e-183 645.2 572 58.7
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-182 644.0 574 59.1
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-182 643.7 578 60.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-182 643.7 574 59.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.4e-182 642.9 397 77.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 6.9e-182 641.3 577 59.4
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-181 639.0 576 58.5
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.3e-180 637.1 574 59.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.2e-179 632.1 578 56.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.3e-177 626.3 566 58.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-176 622.5 586 57.0
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-175 620.2 579 59.1
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.0e-174 615.5 577 56.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.3e-174 615.1 440 67.3
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 5.8e-173 611.7 444 69.4
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.9e-172 609.4 567 61.4
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 7.1e-171 604.7 436 67.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 5.1e-169 598.6 568 57.7
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 8.7e-169 597.8 571 57.4
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.5e-168 596.3 545 60.0
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.2e-164 583.2 585 52.1
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 6.0e-162 575.1 571 56.0
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.5e-160 569.7 574 53.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.1e-158 562.8 575 52.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 9.0e-158 561.2 401 67.8
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.2e-157 560.8 575 55.8
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.3e-156 557.4 384 70.6
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.3e-151 538.5 337 76.0
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.4e-150 536.6 527 53.5
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.9e-149 531.9 556 52.9
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 4.1e-142 509.2 564 53.2
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 6.9e-142 508.4 572 53.1
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.7e-135 486.1 303 76.9
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.8e-121 440.7 482 53.1
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.4e-118 430.3 498 43.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 9.5e-99 365.2 517 46.0
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 5.4e-94 349.4 190 84.7
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.6e-92 342.4 433 40.4
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-91 340.9 309 59.2
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.9e-87 327.0 352 57.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.4e-86 323.9 210 71.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.2e-86 322.0 357 49.6
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.9e-83 314.3 369 48.2
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.7e-74 283.1 155 86.5
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.2e-55 221.1 199 56.8
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.4e-49 201.1 250 53.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.5e-43 181.0 282 42.9
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 9.0e-41 172.6 288 40.6
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.5e-40 170.2 188 53.7
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-33 149.1 91 74.7
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 9.1e-33 146.0 91 73.6
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.4e-32 144.1 502 25.5
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.7e-23 115.2 79 68.4
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 8.5e-23 112.8 69 73.9
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 3.2e-22 110.9 69 72.5
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.2e-22 110.9 69 72.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.2e-21 109.0 115 49.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.0e-19 101.7 180 31.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-17 95.5 150 40.0
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 3.8e-15 87.4 73 58.9
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 5.5e-14 83.6 128 43.0
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-13 82.4 51 74.5
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.3e-11 74.3 105 45.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.4e-09 68.2 54 61.1


User provided reference genes

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