Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.0e-69 265.0 128 100.0
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.0e-61 238.4 129 91.5
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.5e-25 118.6 135 50.4
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.9e-25 117.9 124 52.4
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-24 116.7 125 53.6
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.2e-24 115.9 130 51.5
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.5e-24 114.4 130 51.5
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.5e-24 114.0 129 55.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.1e-23 113.6 127 51.2
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.1e-23 113.6 136 46.3
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.2e-23 112.1 130 49.2
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 4.2e-23 111.7 126 50.0
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.5e-23 111.3 127 50.4
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.5e-23 111.3 127 48.0
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 7.2e-23 110.9 130 49.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 4.7e-22 108.2 132 50.8
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 6.1e-22 107.8 127 46.5
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.1e-22 107.8 130 46.9
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.0e-22 107.5 125 47.2
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.0e-21 107.1 123 51.2
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-21 105.9 126 47.6
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.3e-21 105.9 124 48.4
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.0e-21 105.1 125 46.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.2e-21 104.8 126 48.4
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 5.2e-21 104.8 128 46.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 6.7e-21 104.4 103 56.3
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 8.8e-21 104.0 134 46.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 8.8e-21 104.0 128 46.9
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.5e-20 103.2 131 47.3
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.5e-20 103.2 125 48.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.0e-20 102.8 122 47.5
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.0e-20 102.8 128 47.7
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.6e-20 102.4 134 46.3
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.6e-20 102.4 127 46.5
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 2.6e-20 102.4 130 45.4
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.3e-20 102.1 127 48.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.3e-20 102.1 134 45.5
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.4e-20 101.7 98 53.1
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.4e-20 101.7 98 53.1
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.4e-20 101.7 98 53.1
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.4e-20 101.7 98 53.1
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 4.4e-20 101.7 126 50.0
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.4e-20 101.7 131 46.6
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.4e-20 101.7 135 46.7
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 7.4e-20 100.9 131 46.6
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.3e-19 100.1 137 46.0
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.7e-19 99.8 133 42.1
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.2e-19 99.4 129 47.3
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.2e-19 99.4 139 44.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.2e-19 99.4 129 45.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 4.8e-19 98.2 137 45.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.8e-19 98.2 81 61.7
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 4.8e-19 98.2 137 43.1
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 8.2e-19 97.4 138 42.0
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.1e-18 97.1 130 46.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-18 97.1 81 60.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.4e-18 96.7 130 43.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.4e-18 96.7 125 44.8
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.4e-18 96.7 133 44.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.4e-18 96.7 127 45.7
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.8e-18 96.3 126 42.9
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.4e-18 95.9 142 45.1
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 3.1e-18 95.5 126 44.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 5.3e-18 94.7 125 45.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 9.1e-18 94.0 114 48.2
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-17 93.6 80 57.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.6e-17 93.2 127 41.7
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 2.0e-17 92.8 81 56.8
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 2.0e-17 92.8 125 41.6
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.6e-17 92.4 130 43.8
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.5e-17 92.0 134 42.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 3.5e-17 92.0 127 44.9
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 3.5e-17 92.0 125 46.4
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 4.5e-17 91.7 128 44.5
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 5.9e-17 91.3 126 43.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.7e-17 90.9 93 48.4
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.3e-16 90.1 126 43.7
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.9e-16 89.0 133 43.6
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.8e-16 88.6 94 48.9
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 5.0e-16 88.2 133 45.1
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 5.0e-16 88.2 95 51.6
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.0e-16 88.2 130 45.4
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 6.5e-16 87.8 115 42.6
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 6.5e-16 87.8 132 43.2
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.5e-16 87.8 88 50.0
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 8.5e-16 87.4 113 43.4
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.5e-16 87.4 125 44.0
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-15 87.0 86 50.0
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-15 87.0 90 50.0
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.1e-15 87.0 127 42.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.5e-15 86.7 112 44.6
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.9e-15 86.3 108 44.4
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.9e-15 86.3 131 40.5
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.2e-15 85.5 132 42.4
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.2e-15 85.1 97 46.4
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.2e-15 85.1 123 45.5
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.2e-15 85.1 86 50.0
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.5e-15 84.7 124 46.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.5e-15 84.7 130 42.3
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.2e-15 84.3 134 43.3
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 7.2e-15 84.3 91 48.4
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 7.2e-15 84.3 91 48.4
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.2e-15 84.3 130 42.3
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.2e-15 84.3 97 46.4
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-14 83.6 97 45.4
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-14 83.6 97 45.4
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.2e-14 83.6 132 40.2
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.2e-14 83.6 134 42.5
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-14 83.6 90 48.9
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.6e-14 83.2 127 41.7
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.6e-14 83.2 97 46.4
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.6e-14 83.2 133 42.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.1e-14 82.8 83 48.2
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.1e-14 82.8 87 49.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.7e-14 82.4 139 38.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.6e-14 82.0 132 42.4
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 4.7e-14 81.6 107 44.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.7e-14 81.6 124 41.9
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 6.1e-14 81.3 87 51.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 6.1e-14 81.3 126 39.7
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 6.1e-14 81.3 132 38.6
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 8.0e-14 80.9 126 42.1
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 8.0e-14 80.9 136 42.6
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.0e-13 80.5 88 53.4
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.8e-13 79.7 135 43.7
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.3e-13 79.3 129 41.1
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 2.3e-13 79.3 133 40.6
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 3.0e-13 79.0 127 41.7
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 3.0e-13 79.0 113 42.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.0e-13 78.6 85 51.8
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 4.0e-13 78.6 94 46.8
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.2e-13 78.2 139 41.0
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.2e-13 78.2 125 40.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 8.8e-13 77.4 129 39.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 2.0e-12 76.3 78 46.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.4e-12 75.5 113 38.9
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 7.5e-12 74.3 118 37.3
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 9.8e-12 73.9 92 45.7
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.2e-11 72.8 81 46.9
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 3.7e-11 72.0 136 36.0
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 4.8e-11 71.6 83 44.6
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 6.3e-11 71.2 114 37.7
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 6.3e-11 71.2 114 37.7
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.3e-11 71.2 78 46.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 8.3e-11 70.9 82 45.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 8.3e-11 70.9 114 37.7
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 8.3e-11 70.9 118 37.3
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 8.3e-11 70.9 82 45.1
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-10 70.5 83 43.4
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-10 70.5 98 44.9
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-10 70.1 114 37.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.4e-10 70.1 114 37.7
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.8e-10 69.7 83 43.4
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.8e-10 69.7 83 43.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.8e-10 69.7 98 36.7
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.4e-10 69.3 110 36.4
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.1e-10 68.9 101 41.6
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.1e-10 68.6 114 36.0
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 4.1e-10 68.6 85 43.5
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-10 68.2 98 40.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 5.4e-10 68.2 97 40.2
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 5.4e-10 68.2 80 40.0
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.0e-10 67.8 91 39.6
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 9.1e-10 67.4 100 38.0
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 9.1e-10 67.4 82 41.5
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-09 67.0 39 69.2
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-09 67.0 83 42.2
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.2e-09 67.0 97 38.1
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.6e-09 66.6 103 36.9
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.0e-09 66.2 83 44.6
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.0e-09 66.2 83 44.6
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.7e-09 65.9 82 43.9
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.5e-09 65.5 99 41.4
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 4.5e-09 65.1 114 36.8
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.5e-09 65.1 86 44.2
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 5.9e-09 64.7 82 40.2
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 7.7e-09 64.3 76 42.1
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.3e-08 63.5 101 38.6
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-08 63.2 83 41.0
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 5.0e-08 61.6 75 36.0
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 6.5e-08 61.2 82 39.0
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 8.5e-08 60.8 110 32.7
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 80 37.5


User provided reference genes

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