Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 0.0e+00 1249.2 653 100.0
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 0.0e+00 1181.8 701 88.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.2e-244 848.6 696 61.8
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 4.1e-239 831.6 692 63.9
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 5.5e-236 821.2 637 63.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.2e-227 793.5 699 57.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.4e-215 753.4 632 59.7
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 8.6e-213 744.2 705 55.0
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.5e-212 743.4 702 53.8
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.5e-212 742.7 705 54.3
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 4.7e-211 738.4 715 53.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 2.3e-210 736.1 704 55.8
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 3.4e-209 732.3 700 53.0
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.4e-209 732.3 701 55.2
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.0e-206 723.0 702 53.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.0e-205 720.7 701 52.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 5.0e-205 718.4 689 54.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 8.6e-205 717.6 698 52.6
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.1e-203 711.4 697 54.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.0e-201 706.4 706 54.4
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.8e-201 704.9 701 52.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 7.5e-201 704.5 702 53.0
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.3e-200 703.7 689 53.7
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.1e-199 700.7 697 51.1
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.1e-199 700.7 696 54.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 5.4e-199 698.4 689 51.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 5.4e-199 698.4 689 51.4
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.2e-195 687.2 630 54.0
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.1e-195 686.4 690 50.6
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.7e-195 685.3 690 52.3
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 6.2e-195 684.9 695 50.8
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.2e-192 676.4 693 51.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.2e-192 676.4 684 52.0
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.4e-191 673.7 683 52.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 5.4e-191 671.8 694 50.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.9e-188 663.3 693 48.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.1e-187 659.8 701 52.4
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.7e-187 658.7 695 49.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 6.2e-187 658.3 700 47.9
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.2e-187 658.3 696 49.7
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 6.8e-186 654.8 704 51.1
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.2e-185 654.1 705 50.8
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.0e-185 653.3 703 48.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.6e-185 652.9 695 48.9
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 4.4e-185 652.1 707 49.6
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.5e-185 651.4 742 47.2
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 9.9e-185 651.0 703 51.2
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.2e-184 649.8 699 50.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.9e-183 646.7 700 50.9
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.9e-183 646.7 708 48.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 3.2e-183 646.0 699 49.1
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 5.4e-183 645.2 700 48.6
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.2e-182 644.0 697 49.4
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.2e-182 644.0 704 50.7
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.6e-182 643.7 700 47.0
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 6.0e-182 641.7 699 49.5
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 8.6e-181 637.9 852 44.6
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 4.3e-180 635.6 726 49.9
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 8.1e-179 631.3 728 47.8
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.4e-178 629.8 760 47.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 3.1e-178 629.4 705 47.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.1e-178 629.4 702 47.2
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 8.9e-178 627.9 695 50.2
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.9e-176 622.1 635 49.4
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 6.4e-176 621.7 705 48.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 3.2e-175 619.4 699 47.8
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 4.6e-174 615.5 718 46.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.0e-173 612.8 704 47.7
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 6.6e-173 611.7 656 51.1
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 5.6e-172 608.6 697 46.9
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.6e-172 608.6 698 46.8
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.3e-168 597.4 711 47.1
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.3e-165 587.4 642 48.8
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-165 587.0 702 47.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 3.6e-163 579.3 705 47.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 4.0e-162 575.9 635 45.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.0e-161 573.5 701 45.4
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.3e-156 556.2 710 47.3
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.3e-156 556.2 708 45.2
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.9e-152 543.1 604 47.5
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.4e-152 542.0 739 42.6
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 9.3e-151 538.1 745 45.4
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 9.3e-151 538.1 634 44.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 4.0e-146 522.7 652 43.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.5e-143 512.3 661 44.6
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.6e-137 493.4 453 53.9
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 5.0e-136 489.2 578 47.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.6e-134 484.2 441 56.5
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 5.1e-133 479.2 375 62.1
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 2.4e-130 470.3 452 53.5
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.1e-130 469.9 647 41.7
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.1e-126 455.7 553 44.3
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-113 413.7 639 38.5
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.5e-111 407.9 472 47.9
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.0e-109 401.7 608 38.0
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 4.4e-108 396.4 331 61.0
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 4.7e-102 376.3 591 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.5e-95 352.8 539 36.9
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 3.6e-94 350.1 257 62.3
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.6e-72 275.8 345 40.9
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 7.1e-58 229.6 328 40.5
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.2e-57 228.8 264 45.5
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 3.0e-56 224.2 216 49.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 9.6e-55 219.2 228 48.7
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-52 211.8 182 57.1
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.9e-50 204.9 252 43.7
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.5e-49 200.7 478 31.2
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-48 197.6 215 47.4
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 5.6e-47 193.4 241 44.8
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.8e-45 188.3 247 46.6
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.9e-41 172.9 342 31.3
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 3.4e-36 157.5 162 49.4
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.4e-36 157.5 325 29.5
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-34 152.1 184 44.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.7e-33 147.9 165 46.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.9e-32 144.1 237 35.4
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-31 142.1 169 41.4
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.3e-30 139.0 87 70.1
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.3e-29 133.7 316 29.4
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-26 123.2 287 32.1
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-23 115.5 280 27.9
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-23 114.8 144 42.4
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-23 114.4 201 32.3
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.6e-22 112.1 377 24.9
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 8.2e-22 109.8 143 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.8e-21 108.6 413 27.6
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 9.0e-21 106.3 139 41.0
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.2e-20 105.9 170 38.8
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.3e-19 102.4 174 33.9
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-19 101.3 123 41.5
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.8e-19 100.9 157 39.5
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.2e-18 97.4 190 29.5
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.5e-18 97.1 77 57.1
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.2e-18 96.7 77 55.8
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.1e-17 95.1 414 23.7
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.6e-17 94.4 77 54.5
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 7.9e-17 93.2 104 50.0
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-16 91.7 77 53.2
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 6.7e-16 90.1 76 51.3
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.8e-16 89.7 182 32.4
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-13 82.0 101 45.5
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 4.1e-13 80.9 58 65.5
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.9e-13 80.1 84 48.8
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.9e-13 80.1 266 25.9
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 3.4e-12 77.8 50 68.0
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 3.4e-12 77.8 65 58.5
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 3.8e-11 74.3 138 44.9
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.4e-10 72.4 57 63.2
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 7.2e-10 70.1 136 49.3
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.1e-09 68.6 39 69.2
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 2.7e-09 68.2 66 56.1
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.6e-09 67.8 72 48.6
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.0e-08 66.2 45 57.8
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-08 65.9 139 28.8
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.6e-07 61.6 42 61.9
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-06 59.3 41 65.9
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 2.8e-06 58.2 34 70.6
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.2e-06 56.6 44 59.1


User provided reference genes

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