Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-209 733.0 379 100.0
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 5.9e-190 667.5 358 97.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.3e-132 475.7 361 70.1
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 9.0e-130 467.6 360 68.3
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 9.6e-124 447.6 376 64.1
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.1e-123 446.4 371 66.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.1e-122 444.1 299 70.9
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-122 444.1 314 71.0
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.8e-122 443.4 337 67.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.0e-122 441.0 387 62.0
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.2e-121 440.7 391 59.6
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.2e-121 440.7 302 70.2
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.2e-121 440.7 362 65.2
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.5e-121 440.3 391 59.6
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.0e-121 439.9 377 62.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.0e-121 439.9 377 62.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 3.4e-121 439.1 314 68.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 9.9e-121 437.6 360 64.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.2e-120 436.4 289 75.8
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.9e-120 436.0 377 62.1
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.8e-120 435.6 310 71.9
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 3.8e-120 435.6 358 64.2
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 4.9e-120 435.3 303 70.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.4e-120 434.9 299 70.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 8.4e-120 434.5 365 64.4
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 8.4e-120 434.5 306 72.5
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.1e-119 434.1 347 66.3
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.9e-119 433.3 365 64.1
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.4e-119 433.0 315 70.5
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.5e-119 431.8 351 63.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 5.5e-119 431.8 289 72.3
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 9.3e-119 431.0 294 70.1
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 3.5e-118 429.1 383 60.3
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 7.9e-118 427.9 331 66.8
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.0e-117 427.6 364 63.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.0e-117 427.6 321 67.9
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.3e-117 427.2 348 64.9
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.7e-117 424.9 347 63.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 8.7e-117 424.5 361 62.6
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.3e-116 422.5 365 63.3
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.3e-116 422.5 363 59.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 3.3e-116 422.5 311 68.8
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 5.6e-116 421.8 310 67.1
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 5.6e-116 421.8 311 67.8
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 5.6e-116 421.8 306 67.6
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.1e-115 419.9 317 65.9
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.8e-115 419.5 335 63.6
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.8e-115 419.5 345 65.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.1e-114 417.5 293 67.6
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.1e-114 417.5 280 73.9
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.1e-114 417.5 298 67.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.4e-114 416.4 323 65.3
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 5.3e-114 415.2 317 65.3
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.3e-114 415.2 363 61.4
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.3e-114 415.2 342 62.9
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.0e-114 414.5 365 60.5
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-113 414.1 380 59.5
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.2e-113 414.1 268 72.4
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 2.6e-113 412.9 368 60.6
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 2.6e-113 412.9 316 65.5
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.4e-113 412.5 313 66.5
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.4e-113 412.5 359 61.6
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 4.5e-113 412.1 324 66.7
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 4.5e-113 412.1 324 66.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 4.5e-113 412.1 287 69.0
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 5.8e-113 411.8 308 66.6
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.3e-112 410.6 317 64.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.7e-112 410.2 356 61.5
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-112 409.8 308 68.2
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.4e-111 407.1 350 61.4
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.2e-111 406.0 351 62.4
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.2e-111 406.0 306 66.3
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.2e-111 405.6 308 67.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.2e-111 405.6 314 65.6
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 5.5e-111 405.2 295 67.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 7.1e-111 404.8 370 59.2
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 9.3e-111 404.4 365 60.8
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.1e-110 403.3 299 66.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 2.1e-110 403.3 348 61.2
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.7e-110 402.9 348 62.1
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-110 402.1 306 66.3
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.3e-109 400.6 336 61.0
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 8.7e-109 397.9 350 60.9
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 8.7e-109 397.9 306 65.4
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 8.7e-109 397.9 364 60.4
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 8.7e-109 397.9 268 72.4
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.1e-108 397.5 386 57.0
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.1e-108 397.5 287 65.5
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.5e-108 396.4 380 57.6
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-108 396.4 268 72.0
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-108 396.4 268 72.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.3e-108 396.0 346 61.3
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 9.7e-108 394.4 340 59.7
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 9.7e-108 394.4 346 61.3
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 9.7e-108 394.4 346 61.3
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.7e-107 392.5 330 64.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 6.3e-107 391.7 274 67.5
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.4e-106 390.6 299 65.6
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.6e-105 386.3 367 60.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.4e-105 386.0 320 65.0
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.3e-104 384.0 284 65.8
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.9e-103 380.2 296 64.2
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.5e-100 370.5 296 63.9
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 4.1e-98 362.5 351 57.3
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 9.1e-98 361.3 366 56.0
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 5.9e-97 358.6 378 55.3
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 9.4e-95 351.3 381 52.2
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 8.2e-91 338.2 223 72.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.2e-89 334.3 246 67.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.5e-89 334.0 290 63.8
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 2.0e-89 333.6 275 56.7
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.4e-89 332.8 218 74.8
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.7e-89 331.6 339 50.4
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 2.3e-85 320.1 281 54.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.6e-84 316.6 332 49.7
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.3e-84 316.2 298 53.7
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 3.7e-83 312.8 295 58.3
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.2e-80 303.5 248 62.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 4.7e-78 295.8 211 65.4
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 4.4e-76 289.3 279 53.4
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.0e-72 278.1 207 69.6
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.2e-72 276.9 316 54.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.1e-70 268.9 191 65.4
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 4.0e-69 266.2 191 69.1
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.7e-67 260.8 245 62.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.4e-58 231.1 165 64.8
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.1e-58 229.9 217 53.0
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.3e-48 198.0 190 54.7
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 2.5e-47 193.7 120 72.5
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 9.8e-44 181.8 301 35.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.0e-42 175.6 198 52.5
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.3e-37 160.6 279 34.4
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.8e-30 137.1 117 56.4
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.1e-29 135.2 305 29.8
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.2e-28 131.7 75 78.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 8.7e-24 115.5 67 74.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 3.3e-23 113.6 94 53.2
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.8e-22 110.5 64 73.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 4.9e-19 99.8 77 70.1
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 2.7e-17 94.0 103 47.6
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 4.3e-15 86.7 188 30.3
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.2e-11 74.3 125 40.8


User provided reference genes

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