Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.7e-138 495.4 256 100.0
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 5.7e-136 487.6 256 98.4
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.2e-93 347.1 257 74.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.8e-88 327.4 260 70.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.2e-87 326.2 256 69.9
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.9e-87 325.1 261 70.1
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.3e-87 324.3 256 71.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.4e-86 323.6 253 69.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.4e-86 323.6 253 69.2
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.4e-86 323.6 256 71.1
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.8e-86 323.2 256 69.5
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.4e-86 322.8 258 69.8
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-86 322.8 256 69.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.4e-86 322.8 257 70.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.1e-86 322.4 257 71.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.1e-86 322.4 257 71.2
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-86 322.0 256 70.3
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.2e-86 320.9 256 69.9
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 9.2e-86 320.9 256 72.3
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.6e-85 320.1 256 68.0
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.6e-85 320.1 256 68.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.7e-85 319.3 256 69.5
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.7e-85 319.3 256 69.5
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.5e-85 318.5 256 68.8
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.9e-85 318.2 254 70.1
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-84 316.6 257 68.5
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.9e-84 315.8 262 67.2
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.8e-84 315.5 259 68.0
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.8e-84 315.5 256 68.0
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 5.0e-84 315.1 259 69.5
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 8.6e-84 314.3 256 67.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.1e-83 313.9 256 68.0
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.5e-83 312.8 256 68.4
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 9.5e-83 310.8 264 66.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.6e-82 310.1 256 67.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.1e-82 309.7 275 65.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.8e-82 309.3 259 67.2
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 3.6e-82 308.9 256 69.1
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.6e-82 308.9 256 66.8
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.6e-82 308.9 255 67.5
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 4.7e-82 308.5 257 66.1
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.7e-82 308.5 259 66.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.0e-82 307.8 259 66.0
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.0e-81 307.4 258 68.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.4e-81 307.0 256 66.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.4e-81 307.0 259 65.6
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.8e-81 306.6 249 69.9
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.8e-81 306.6 258 67.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.3e-81 306.2 259 66.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.3e-81 306.2 259 65.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 3.0e-81 305.8 257 66.5
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.2e-81 305.1 255 67.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.2e-81 305.1 257 66.9
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 6.8e-81 304.7 257 66.9
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.8e-81 304.7 258 67.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 6.8e-81 304.7 259 65.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.5e-80 303.5 251 67.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.6e-80 302.8 257 66.1
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.6e-80 302.8 256 65.6
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 4.4e-80 302.0 256 68.0
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.4e-80 302.0 257 67.7
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 5.8e-80 301.6 259 64.5
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.5e-80 301.2 260 66.9
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 7.5e-80 301.2 257 67.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.7e-79 300.1 251 64.1
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.7e-79 300.1 271 66.1
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 3.7e-79 298.9 256 65.6
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 4.9e-79 298.5 251 63.7
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 6.4e-79 298.1 254 66.5
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.4e-78 297.0 251 63.7
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.4e-78 297.0 257 62.6
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.2e-78 295.8 242 70.7
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.1e-78 295.4 244 68.4
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-78 295.0 244 68.4
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 7.0e-78 294.7 257 65.4
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-77 293.9 251 63.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.6e-77 293.5 251 63.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.6e-77 293.5 258 65.1
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.0e-77 293.1 251 63.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-77 292.7 260 63.1
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 3.5e-77 292.4 258 64.3
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.6e-77 292.0 262 64.9
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.6e-77 292.0 257 63.8
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.0e-77 291.6 251 62.5
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.0e-77 291.6 251 62.5
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 7.8e-77 291.2 251 62.5
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 7.8e-77 291.2 255 65.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.0e-76 290.8 252 62.7
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.3e-76 290.4 255 63.1
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-76 290.0 251 62.2
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.0e-76 289.3 242 66.9
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 5.0e-76 288.5 251 62.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 8.6e-76 287.7 259 65.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.5e-75 286.2 257 61.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.3e-75 285.8 258 61.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.3e-75 285.4 256 63.3
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-75 285.4 256 65.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 5.6e-75 285.0 214 70.6
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 5.6e-75 285.0 243 65.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 5.6e-75 285.0 246 65.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.2e-74 283.9 320 54.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.1e-74 283.1 257 60.7
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 4.7e-74 282.0 256 64.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-74 282.0 256 64.5
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-74 282.0 256 64.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-74 282.0 256 64.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.7e-74 282.0 256 64.5
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.2e-74 281.6 257 61.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.3e-73 279.6 255 62.4
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.3e-73 279.6 256 64.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.1e-73 279.3 240 67.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 4.0e-73 278.9 240 67.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.2e-73 278.5 241 66.4
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.6e-72 276.2 249 63.1
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.4e-72 275.8 257 61.5
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 7.5e-72 274.6 248 61.7
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.8e-72 274.2 225 66.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.3e-71 273.9 259 59.5
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.7e-71 272.3 259 59.8
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.7e-71 272.3 206 68.0
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.9e-70 270.0 257 58.8
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-70 270.0 257 59.9
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-70 270.0 257 59.9
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.9e-70 270.0 257 59.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.4e-70 269.6 328 51.5
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.1e-70 268.9 257 58.8
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.2e-69 267.3 238 63.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.7e-69 266.2 257 60.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.7e-69 266.2 225 64.9
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 6.0e-69 265.0 261 57.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.0e-68 264.2 251 58.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.6e-66 255.8 259 57.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.5e-64 250.4 259 56.8
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-62 243.4 243 58.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 3.5e-61 239.2 320 47.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 6.0e-61 238.4 250 55.2
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 8.6e-60 234.6 136 82.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.5e-59 233.0 145 78.6
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.6e-59 231.9 147 77.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 7.3e-59 231.5 240 59.6
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 9.5e-59 231.1 257 52.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.4e-57 227.3 260 51.5
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.3e-52 209.9 224 54.9
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-51 207.6 165 65.5
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.5e-51 206.5 258 50.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-50 204.1 165 64.2
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.4e-46 190.7 109 82.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 5.4e-46 188.7 121 87.6
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 5.1e-44 182.2 117 76.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.7e-44 181.4 203 55.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 9.6e-43 177.9 274 44.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.4e-38 163.3 294 39.8
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.7e-31 140.6 282 37.6
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.3e-28 131.0 275 37.1
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.3e-28 130.2 95 67.4
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.5e-24 117.5 89 59.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 3.4e-24 116.3 137 58.4
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.1e-22 111.3 138 57.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.8e-20 104.0 69 71.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 4.8e-18 95.9 125 37.6
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.0e-16 90.5 90 44.4
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 6.5e-15 85.5 100 59.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.2e-14 82.8 107 45.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 7.9e-13 78.6 80 58.8
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-11 74.3 80 56.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.5e-11 74.3 81 50.6
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.8e-10 70.1 85 47.1
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.1e-09 66.2 163 31.3
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.5e-07 58.9 96 44.8


User provided reference genes

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