Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.8e-241 838.2 418 100.0
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 1.7e-238 828.9 418 99.0
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 4.7e-188 661.4 432 76.6
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 5.2e-187 657.9 372 84.7
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 6.7e-187 657.5 432 76.2
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 5.7e-186 654.4 387 82.2
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 9.7e-186 653.7 375 84.3
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.7e-185 651.7 387 82.2
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 6.3e-185 651.0 371 85.2
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 6.3e-185 651.0 387 81.9
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 6.3e-185 651.0 447 74.0
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.1e-184 650.2 392 81.9
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.1e-184 650.2 430 75.6
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.1e-184 650.2 376 82.7
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 2.4e-184 649.0 392 81.9
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 7.0e-184 647.5 417 77.5
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 9.1e-184 647.1 364 86.3
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.0e-183 646.0 402 78.6
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 3.5e-183 645.2 411 77.9
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 3.5e-183 645.2 423 75.7
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 4.5e-183 644.8 434 75.8
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 7.7e-183 644.0 402 78.4
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.3e-182 643.3 402 78.1
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.7e-182 642.9 402 78.4
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 8.5e-182 640.6 416 77.6
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 8.5e-182 640.6 425 75.8
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 8.5e-182 640.6 415 76.4
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 1.5e-181 639.8 386 80.8
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 1.5e-181 639.8 380 81.6
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 1.9e-181 639.4 414 76.1
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 2.5e-181 639.0 427 75.2
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 3.2e-181 638.6 428 75.0
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 7.2e-181 637.5 386 80.8
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 1.2e-180 636.7 407 77.9
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.7e-180 635.6 385 81.0
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 2.7e-180 635.6 386 80.1
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 6.1e-180 634.4 376 80.3
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 6.1e-180 634.4 414 76.8
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 8.0e-180 634.0 387 79.8
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.0e-179 633.6 385 80.5
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 1.4e-179 633.3 421 75.3
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 1.4e-179 633.3 406 77.8
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 5.2e-179 631.3 419 74.5
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 5.2e-179 631.3 419 74.5
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 6.8e-179 630.9 376 81.6
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 8.8e-179 630.6 377 79.6
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.2e-178 630.2 418 75.6
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.2e-178 630.2 422 74.4
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 2.0e-178 629.4 408 75.7
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 4.4e-178 628.2 364 83.2
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 5.7e-178 627.9 378 81.0
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 1.3e-177 626.7 427 74.9
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.7e-177 626.3 375 79.5
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.2e-177 625.9 414 73.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 2.2e-177 625.9 391 78.5
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 2.2e-177 625.9 429 74.4
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.7e-177 625.2 375 79.5
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 6.3e-177 624.4 414 73.7
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 6.3e-177 624.4 364 82.7
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 8.3e-177 624.0 388 79.6
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.1e-176 623.6 376 80.1
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.1e-176 623.6 376 80.1
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 1.8e-176 622.9 378 78.6
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 2.4e-176 622.5 381 78.7
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 4.1e-176 621.7 384 79.2
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 5.4e-176 621.3 364 82.1
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 5.4e-176 621.3 429 73.4
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 7.0e-176 620.9 443 72.5
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 9.1e-176 620.5 378 78.0
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 2.0e-175 619.4 367 80.4
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 4.5e-175 618.2 369 78.9
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 4.5e-175 618.2 429 71.8
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 7.7e-175 617.5 397 75.6
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.0e-174 617.1 369 78.6
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 1.3e-174 616.7 403 77.2
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.3e-174 616.7 379 78.9
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.7e-174 616.3 414 72.7
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.7e-174 616.3 367 79.8
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.8e-174 615.1 414 72.7
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 5.0e-174 614.8 361 80.6
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 6.5e-174 614.4 384 77.3
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 8.5e-174 614.0 386 78.2
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 8.5e-174 614.0 386 75.9
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.1e-173 613.6 420 72.6
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.1e-173 613.6 420 73.1
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.1e-173 613.6 406 75.1
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 2.5e-173 612.5 415 72.3
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 9.5e-173 610.5 413 74.6
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 3.6e-172 608.6 380 76.3
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 4.7e-172 608.2 367 78.5
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 4.7e-172 608.2 367 78.5
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 4.7e-172 608.2 402 74.1
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 4.7e-172 608.2 435 70.3
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 6.1e-172 607.8 418 72.0
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.0e-171 607.1 423 71.4
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.8e-171 606.3 358 80.2
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.8e-171 606.3 402 74.4
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 2.3e-171 605.9 486 66.0
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 4.0e-171 605.1 397 74.8
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 4.0e-171 605.1 374 77.3
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 1.5e-170 603.2 425 70.4
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 9.8e-170 600.5 443 69.1
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 2.2e-169 599.4 389 76.1
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 2.0e-167 592.8 424 71.7
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 4.5e-167 591.7 385 77.1
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 1.0e-166 590.5 414 71.3
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 3.2e-160 568.9 463 64.4
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 9.2e-160 567.4 417 70.0
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 2.0e-159 566.2 331 81.6
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 2.7e-159 565.8 335 83.6
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 3.5e-159 565.5 386 73.1
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.2e-154 550.4 340 77.1
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.3e-150 537.0 376 67.8
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 3.3e-149 532.3 375 67.7
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.0e-147 525.4 362 68.2
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 2.9e-137 492.7 437 60.6
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 2.9e-137 492.7 290 81.4
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 3.8e-137 492.3 422 61.4
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 8.4e-137 491.1 358 65.9
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 5.8e-130 468.4 372 65.1
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 3.8e-129 465.7 309 74.1
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 8.4e-129 464.5 350 63.1
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 6.2e-124 448.4 365 59.2
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 3.2e-120 436.0 255 83.1
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 3.7e-116 422.5 311 69.5
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 4.5e-114 415.6 329 66.9
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 2.8e-108 396.4 248 78.6
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 4.6e-103 379.0 259 69.9
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 8.7e-102 374.8 262 71.8
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.5e-101 373.2 381 53.3
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.2e-82 311.2 406 45.6
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.7e-81 307.4 178 82.6
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 8.0e-79 298.5 179 79.9
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.7e-78 295.4 177 81.9
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 1.6e-71 274.2 191 71.7
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.2e-61 241.5 183 67.8
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.2e-61 241.5 183 67.8
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 8.6e-57 225.3 159 71.1
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-51 208.0 152 64.5
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.5e-50 203.4 124 75.0
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.0e-46 191.8 128 68.8
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 6.4e-44 182.6 168 58.3
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.2e-34 151.8 381 30.4
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 1.6e-34 151.4 94 78.7
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 2.7e-34 150.6 86 79.1
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.5e-34 150.2 183 49.7
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 6.8e-30 136.0 77 80.5
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.3e-28 131.7 132 52.3
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.4e-27 127.5 120 55.8
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 7.1e-27 125.9 127 53.5
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 8.1e-23 112.5 168 41.7
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 2.7e-18 97.4 116 47.4
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 8.1e-15 85.9 52 76.9
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 4.4e-13 80.1 234 29.5
Phvul.009G122800 Phaseolus vulgaris HOM05D002771 ORTHO05D003078 7.6e-13 79.3 269 25.7
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 7.6e-13 79.3 402 24.9
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 2.4e-11 74.3 267 24.0
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 7.1e-11 72.8 244 25.0
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 2.7e-10 70.9 231 24.7
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 2.7e-10 70.9 285 25.3
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 3.5e-10 70.5 231 25.1
Eucgr.F04444 Eucalyptus grandis HOM05D002771 ORTHO05D003078 7.8e-10 69.3 294 23.5
Eucgr.F04446 Eucalyptus grandis HOM05D002771 ORTHO05D003078 7.8e-10 69.3 294 23.5
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 1.0e-09 68.9 216 25.5
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 1.7e-09 68.2 230 25.7
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 1.7e-09 68.2 257 24.9
Ca_29349_v3 Cicer arietinum L. HOM05D002023 ORTHO05D044259 2.3e-09 67.8 326 26.1
Hund06596 Selenicereus undatus HOM05D004697 ORTHO05D006015 2.3e-09 67.8 285 23.5
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 6.6e-09 66.2 35 77.1
HanXRQChr17g0541721 Helianthus annuus HOM05D000658 ORTHO05D000826 1.1e-08 65.5 308 23.1
Mapoly0162s0009 Marchantia polymorpha HOM05D002771 ORTHO05D003078 1.5e-08 65.1 258 24.4
Ciclev10025775m.g Citrus clementina HOM05D004697 ORTHO05D006015 1.9e-08 64.7 288 24.7
arahy.Tifrunner.gnm1.ann1.HZ04KR Arachis hypogaea HOM05D000658 ORTHO05D000826 3.3e-08 63.9 308 24.7
Manes.01G225000 Manihot esculenta HOM05D002771 ORTHO05D003078 3.3e-08 63.9 257 24.9
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 4.3e-08 63.5 29 96.6
AUR62038977 Chenopodium quinoa HOM05D000658 ORTHO05D000826 5.6e-08 63.2 256 23.0
Potri.014G124100 Populus trichocarpa HOM05D002771 ORTHO05D003078 5.6e-08 63.2 253 23.7
AUR62011602 Chenopodium quinoa HOM05D004697 ORTHO05D006015 9.6e-08 62.4 255 24.7
PGR102G0607 Punica granatum HOM05D004697 ORTHO05D006015 1.3e-07 62.0 286 25.2
Ah.01g021080 Amaranthus hybridus HOM05D004697 ORTHO05D006015 1.6e-07 61.6 255 24.7
Hund00582 Selenicereus undatus HOM05D004697 ORTHO05D006015 2.1e-07 61.2 259 25.5
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 2.8e-07 60.8 257 26.1
HanXRQChr06g0167801 Helianthus annuus HOM05D002771 ORTHO05D003078 8.1e-07 59.3 286 22.4
GSVIVG01020592001 Vitis vinifera HOM05D000658 ORTHO05D000826 8.1e-07 59.3 276 24.3
Thecc.09G144900 Theobroma cacao HOM05D004697 ORTHO05D006015 2.4e-06 57.8 239 27.2
Lsat_1_v5_gn_4_104321 Lactuca sativa HOM05D004697 ORTHO05D006015 3.1e-06 57.4 212 25.0


User provided reference genes

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