Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 2.5e-139 500.0 251 100.0
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 7.0e-121 438.7 232 96.6
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.5e-41 173.3 202 49.0
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.5e-41 173.3 188 52.1
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.9e-34 151.0 206 44.7
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.7e-30 136.7 263 33.1
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 7.4e-30 136.3 205 41.5
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 8.2e-29 132.9 185 44.9
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.1e-28 132.5 185 44.9
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-28 132.1 263 32.3
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.6e-27 127.9 243 35.4
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 5.0e-26 123.6 228 35.1
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 5.0e-26 123.6 204 38.2
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 2.5e-25 121.3 203 39.4
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 3.2e-25 120.9 248 31.5
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 5.5e-25 120.2 224 33.9
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 5.5e-25 120.2 181 39.2
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 5.5e-25 120.2 233 37.3
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.7e-24 117.9 238 34.5
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.7e-24 117.9 244 34.4
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 3.6e-24 117.5 279 30.1
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 3.6e-24 117.5 198 37.4
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.6e-24 117.5 196 36.7
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 2.3e-23 114.8 195 37.9
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 3.9e-23 114.0 284 28.5
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 5.1e-23 113.6 191 39.8
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 6.7e-23 113.2 283 27.6
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 1.5e-22 112.1 269 30.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.5e-22 112.1 246 30.1
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.9e-22 111.7 182 36.8
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.9e-22 111.7 257 29.6
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 9.7e-22 109.4 241 30.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 1.3e-21 109.0 177 39.0
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.2e-21 108.2 166 39.2
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 8.2e-21 106.3 198 37.4
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.4e-20 105.5 242 30.2
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.4e-20 104.8 191 34.0
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.4e-20 104.8 204 37.7
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 3.1e-20 104.4 192 39.6
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 3.1e-20 104.4 243 28.4
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 4.1e-20 104.0 170 36.5
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 5.3e-20 103.6 202 36.6
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 1.2e-19 102.4 248 29.4
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.5e-19 102.1 182 35.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 2.0e-19 101.7 184 32.1
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 2.0e-19 101.7 202 31.7
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 4.5e-19 100.5 206 34.0
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 5.9e-19 100.1 147 39.5
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 5.9e-19 100.1 260 30.0
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 7.7e-19 99.8 241 27.8
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 7.7e-19 99.8 206 33.5
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.0e-18 99.4 248 29.0
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.3e-18 99.0 262 29.4
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.7e-18 98.6 240 32.1
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.7e-18 98.6 195 31.8
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 2.2e-18 98.2 185 36.8
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 2.2e-18 98.2 256 31.6
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.2e-18 98.2 176 38.1
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 2.9e-18 97.8 224 31.7
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 3.8e-18 97.4 242 30.6
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 5.0e-18 97.1 201 30.3
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 8.5e-18 96.3 251 28.7
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.4e-17 95.5 252 30.6
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.4e-17 95.5 242 30.2
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.9e-17 95.1 204 32.4
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.2e-17 94.0 275 28.7
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 7.2e-17 93.2 154 33.1
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 7.2e-17 93.2 190 33.7
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 7.2e-17 93.2 205 35.1
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 9.4e-17 92.8 238 27.3
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 9.4e-17 92.8 277 25.6
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 9.4e-17 92.8 287 27.5
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.2e-16 92.4 184 34.8
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 2.1e-16 91.7 224 30.8
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.7e-16 91.3 205 30.7
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 2.7e-16 91.3 193 34.2
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 3.6e-16 90.9 222 31.1
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 3.6e-16 90.9 201 31.3
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.0e-15 89.4 281 27.4
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.0e-15 89.4 250 31.2
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.4e-15 89.0 245 27.3
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.8e-15 88.6 191 35.1
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.3e-15 88.2 233 29.6
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.3e-15 88.2 153 35.9
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.3e-15 88.2 199 29.1
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 3.9e-15 87.4 154 35.1
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 5.1e-15 87.0 244 29.9
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 8.8e-15 86.3 250 30.4
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.5e-14 85.5 257 29.6
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.5e-14 85.5 190 33.7
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.0e-14 85.1 290 25.9
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 2.0e-14 85.1 223 30.5
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.3e-14 84.3 200 30.5
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.3e-14 84.3 180 33.3
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.3e-14 84.3 244 29.5
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 3.3e-14 84.3 238 28.6
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 4.4e-14 84.0 210 31.0
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.4e-14 84.0 173 31.2
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 5.7e-14 83.6 248 29.0
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 5.7e-14 83.6 191 28.3
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 5.7e-14 83.6 191 28.3
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 9.7e-14 82.8 169 34.9
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 9.7e-14 82.8 192 31.8
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.7e-13 82.0 201 28.4
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-13 81.3 174 33.9
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 8.2e-13 79.7 231 27.7
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.8e-12 78.6 280 27.9
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 3.1e-12 77.8 206 31.1
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.1e-12 77.8 194 30.9
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 4.1e-12 77.4 252 26.2
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.1e-12 77.4 205 30.7
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 5.3e-12 77.0 246 25.6
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 5.3e-12 77.0 241 25.3
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 9.1e-12 76.3 278 24.1
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 9.1e-12 76.3 146 34.2
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 9.1e-12 76.3 149 32.9
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.2e-11 75.9 146 35.6
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.2e-11 75.9 205 30.7
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.0e-11 75.1 196 30.1
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 4.5e-11 73.9 197 31.5
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 4.5e-11 73.9 132 33.3
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 4.5e-11 73.9 274 25.2
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.7e-10 72.0 211 26.5
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 1.7e-10 72.0 171 28.7
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.7e-10 72.0 140 32.1
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 2.9e-10 71.2 197 30.5
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 3.8e-10 70.9 146 33.6
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 5.0e-10 70.5 179 27.4
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 8.5e-10 69.7 185 30.3
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 1.1e-09 69.3 118 37.3
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.1e-08 65.1 223 26.9
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.6e-08 64.3 235 23.4
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 1.8e-07 62.0 170 27.1
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.8e-07 62.0 226 25.2
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 2.3e-07 61.6 222 24.3
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.0e-07 61.2 229 24.5
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 3.9e-07 60.8 223 22.9
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 5.2e-07 60.5 156 25.0
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.1e-06 59.3 154 29.2
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.5e-06 58.9 139 25.9
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 2.0e-06 58.5 148 29.7
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 9.7e-06 56.2 240 21.7
CsaV3_5G030530 Cucumis sativus L. HOM05D000424 ORTHO05D008586 9.7e-06 56.2 86 34.9


User provided reference genes

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