Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.6e-106 388.3 195 100.0
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.2e-100 369.0 195 94.4
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.9e-63 245.0 196 64.3
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-61 240.4 196 63.8
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.0e-61 239.6 195 62.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 3.5e-61 238.8 196 62.2
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.3e-60 236.1 197 62.9
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 3.0e-60 235.7 196 61.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.5e-59 232.6 195 61.5
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.6e-59 231.5 195 63.1
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 5.6e-59 231.5 199 61.3
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-58 230.3 195 63.1
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.1e-58 229.6 197 61.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.1e-58 229.6 195 59.0
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.8e-58 229.2 195 61.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 6.2e-58 228.0 140 76.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 6.2e-58 228.0 197 60.9
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.3e-57 226.1 192 60.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.1e-57 225.7 163 66.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 4.0e-57 225.3 137 77.4
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 6.8e-57 224.6 128 79.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 8.9e-57 224.2 143 74.8
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.2e-56 223.8 196 60.7
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.2e-56 223.8 195 59.0
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.5e-56 223.4 191 60.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 3.4e-56 222.2 195 59.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 3.4e-56 222.2 198 57.1
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.4e-56 222.2 194 58.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 4.4e-56 221.9 196 59.2
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 7.5e-56 221.1 196 59.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 9.8e-56 220.7 197 60.4
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-55 220.3 141 74.5
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.3e-55 220.3 128 77.3
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.7e-55 219.9 174 63.8
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-55 219.9 157 68.2
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.7e-55 219.9 157 68.2
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.2e-55 219.5 195 60.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.2e-55 219.5 157 68.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.2e-55 219.5 199 57.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 4.9e-55 218.4 195 61.5
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 6.4e-55 218.0 128 77.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 8.3e-55 217.6 205 54.1
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 8.3e-55 217.6 128 77.3
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 8.3e-55 217.6 193 60.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 8.3e-55 217.6 137 73.0
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-54 217.2 188 60.1
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.1e-54 217.2 195 56.9
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-54 216.9 128 74.2
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.9e-54 216.5 158 67.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.9e-54 216.5 197 58.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.9e-54 216.5 142 77.5
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.4e-54 216.1 133 72.9
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.4e-54 216.1 128 77.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.4e-54 216.1 196 57.7
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.2e-54 215.7 133 72.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.2e-54 215.7 140 68.6
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 4.1e-54 215.3 200 57.5
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 5.4e-54 214.9 191 58.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 7.0e-54 214.5 141 68.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 7.0e-54 214.5 193 58.5
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 9.2e-54 214.2 143 72.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-53 213.8 139 69.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-53 213.8 133 71.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.2e-53 213.8 195 55.9
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.0e-53 213.0 195 55.9
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.7e-53 212.6 133 70.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.7e-53 212.6 197 57.9
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.5e-53 212.2 195 56.9
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.6e-53 211.8 187 55.1
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 4.6e-53 211.8 129 76.7
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 6.0e-53 211.5 147 70.1
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 6.0e-53 211.5 195 57.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 7.8e-53 211.1 128 73.4
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.0e-52 210.7 139 68.3
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-52 210.3 175 57.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.7e-52 209.9 191 57.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.3e-52 209.5 130 78.5
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.3e-52 209.5 128 72.7
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 3.0e-52 209.1 159 62.9
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.9e-52 208.8 128 71.9
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 3.9e-52 208.8 128 74.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 5.0e-52 208.4 150 70.0
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 6.6e-52 208.0 195 55.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 6.6e-52 208.0 140 65.7
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 8.6e-52 207.6 195 56.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-51 207.2 128 74.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.5e-51 206.8 128 71.1
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.9e-51 206.5 174 59.2
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.9e-51 206.5 128 71.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.5e-51 206.1 196 60.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.5e-51 206.1 172 61.6
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 3.3e-51 205.7 152 67.8
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 3.3e-51 205.7 172 61.0
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 4.3e-51 205.3 172 61.6
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 4.3e-51 205.3 128 72.7
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.6e-51 204.9 232 50.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 5.6e-51 204.9 195 59.0
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.6e-51 204.9 172 61.0
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.6e-51 204.9 181 57.5
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 9.5e-51 204.1 172 61.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 9.5e-51 204.1 196 55.6
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.2e-50 203.8 195 57.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.2e-50 203.8 159 61.0
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.8e-50 202.6 147 65.3
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.6e-50 202.2 200 54.0
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.7e-50 201.8 156 66.0
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 8.1e-50 201.1 162 63.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.1e-49 200.7 128 73.4
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.4e-49 200.3 187 54.5
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.1e-49 199.1 114 78.1
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 5.2e-49 198.4 128 72.7
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 6.8e-49 198.0 174 55.7
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.4e-48 195.7 199 53.8
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.3e-47 193.7 115 73.0
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.9e-47 192.6 128 67.2
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.9e-47 192.6 150 65.3
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.9e-47 191.8 127 66.9
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.9e-46 189.9 177 53.7
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.7e-45 186.0 169 58.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.0e-45 184.9 171 57.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 3.9e-44 182.2 265 41.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 5.6e-43 178.3 116 70.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 8.1e-42 174.5 137 60.6
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.4e-41 173.7 286 38.5
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 5.2e-41 171.8 123 61.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.6e-37 160.2 124 59.7
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.9e-35 153.3 87 75.9
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 8.1e-34 147.9 191 44.0
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.7e-31 140.2 102 68.6
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.1e-29 133.3 116 55.2
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 6.0e-29 131.7 79 72.2
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 7.8e-29 131.3 149 52.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.0e-28 129.4 86 66.3
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-27 127.5 141 53.9
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 3.3e-27 125.9 72 76.4
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.0e-24 116.7 72 66.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.2e-22 109.4 65 67.7
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 7.9e-21 104.8 103 44.7
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.9e-20 102.4 124 39.5
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.6e-18 97.1 59 72.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.0e-17 92.4 56 78.6
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.1e-09 66.2 66 59.1
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-07 60.8 35 71.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.2e-07 60.1 51 49.0


User provided reference genes

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