Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 2.2e-41 171.8 83 100.0
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.0e-17 93.2 67 65.7
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.9e-17 91.7 92 56.5
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.9e-17 91.7 92 56.5
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 2.9e-17 91.7 64 68.8
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 3.8e-17 91.3 89 56.2
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 5.0e-17 90.9 86 50.0
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 2.5e-16 88.6 68 63.2
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 2.5e-16 88.6 69 65.2
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 3.2e-16 88.2 89 52.8
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 4.2e-16 87.8 68 64.7
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 5.5e-16 87.4 64 64.1
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 7.2e-16 87.0 90 50.0
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 9.4e-16 86.7 83 53.0
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 9.4e-16 86.7 90 50.0
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.2e-15 86.3 69 63.8
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 1.2e-15 86.3 65 63.1
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 1.2e-15 86.3 64 67.2
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.6e-15 85.9 68 61.8
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.6e-15 85.9 95 48.4
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 2.1e-15 85.5 68 58.8
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 2.7e-15 85.1 69 62.3
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 6.1e-15 84.0 80 52.5
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 6.1e-15 84.0 93 47.3
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 6.1e-15 84.0 93 47.3
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.0e-14 83.2 64 65.6
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 1.0e-14 83.2 69 58.0
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 1.4e-14 82.8 64 57.8
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 1.8e-14 82.4 84 53.6
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 2.3e-14 82.0 77 53.2
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.0e-14 81.6 64 62.5
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 5.2e-14 80.9 64 59.4
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 5.2e-14 80.9 64 59.4
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 5.2e-14 80.9 72 52.8
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 6.8e-14 80.5 68 57.4
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 6.8e-14 80.5 68 51.5
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 1.2e-13 79.7 64 60.9
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 1.2e-13 79.7 64 62.5
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 1.5e-13 79.3 61 62.3
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 3.4e-13 78.2 66 56.1
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 3.4e-13 78.2 64 54.7
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 4.4e-13 77.8 64 56.2
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 5.7e-13 77.4 63 61.9
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 9.8e-13 76.6 75 50.7
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 9.8e-13 76.6 64 54.7
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.3e-12 76.3 70 50.0
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.7e-12 75.9 73 47.9
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.7e-12 75.9 69 50.7
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 2.2e-12 75.5 75 49.3
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 3.7e-12 74.7 66 50.0
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 8.3e-12 73.6 82 42.7
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 8.3e-12 73.6 82 43.9
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 1.1e-11 73.2 64 50.0
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 1.4e-11 72.8 61 55.7
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 3.1e-11 71.6 83 43.4
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 3.1e-11 71.6 88 42.0
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 5.4e-11 70.9 79 48.1
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 7.0e-11 70.5 64 53.1
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 7.0e-11 70.5 65 53.8
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.2e-10 69.7 64 53.1
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.8e-09 64.7 65 50.8
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 8.5e-09 63.5 64 46.9
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 1.5e-08 62.8 90 44.4
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 5.5e-08 60.8 61 44.3
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 9.4e-08 60.1 62 41.9
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.1e-07 58.9 65 47.7
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 2.1e-07 58.9 61 39.3
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 2.1e-07 58.9 64 42.2
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 4.7e-07 57.8 64 50.0
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 8.0e-07 57.0 69 42.0
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 1.8e-06 55.8 64 45.3
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 2.3e-06 55.5 73 39.7
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 2.3e-06 55.5 73 42.5
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 3.0e-06 55.1 85 35.3
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 3.0e-06 55.1 65 41.5
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 3.0e-06 55.1 65 41.5
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 4.0e-06 54.7 64 40.6
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 5.2e-06 54.3 64 37.5
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 6.8e-06 53.9 64 40.6
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 6.8e-06 53.9 70 37.1
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 6.8e-06 53.9 66 42.4


User provided reference genes

Program Settings