Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.2e-115 419.9 209 100.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.6e-110 402.1 210 95.7
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.5e-51 205.7 200 56.0
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 7.8e-51 204.5 216 54.2
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-48 197.2 203 55.2
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.6e-48 196.8 187 57.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.1e-48 196.4 203 55.2
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.7e-48 195.3 203 54.2
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 6.2e-48 194.9 193 53.4
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-47 194.1 194 57.2
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.4e-47 193.7 193 56.0
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.4e-47 193.0 214 52.3
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 3.1e-47 192.6 201 53.7
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.0e-47 192.2 201 53.2
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 5.2e-47 191.8 198 53.0
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 6.8e-47 191.4 201 54.2
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-46 190.3 203 53.7
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 5.8e-46 188.3 191 53.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 5.8e-46 188.3 196 53.6
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.9e-46 187.6 202 53.0
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.9e-46 187.6 195 50.8
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.3e-45 187.2 194 54.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.2e-45 186.4 196 53.1
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.2e-45 186.4 204 50.5
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.9e-45 186.0 193 55.4
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.9e-45 186.0 193 55.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.8e-45 185.7 191 53.4
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.9e-45 185.3 194 54.6
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 8.4e-45 184.5 197 52.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 8.4e-45 184.5 185 54.6
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 8.4e-45 184.5 212 50.0
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.1e-44 184.1 217 50.2
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.1e-44 184.1 142 66.2
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.2e-44 182.2 192 53.1
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 4.2e-44 182.2 201 51.2
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.1e-44 181.4 188 53.7
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.1e-44 181.4 203 53.2
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 9.2e-44 181.0 200 52.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.6e-43 180.3 201 52.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.6e-43 180.3 194 51.5
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.1e-43 179.9 202 52.0
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.1e-43 179.9 215 48.8
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.5e-43 179.1 188 53.2
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.5e-43 179.1 191 52.9
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.6e-43 178.7 143 62.9
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.6e-43 178.7 192 53.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 4.6e-43 178.7 198 52.5
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 6.0e-43 178.3 200 51.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 6.0e-43 178.3 203 51.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 6.0e-43 178.3 195 52.3
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 7.8e-43 177.9 207 48.8
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.0e-42 177.6 200 52.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.0e-42 177.6 206 50.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.3e-42 177.2 190 52.6
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-42 176.8 192 50.5
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.3e-42 176.4 185 50.3
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.0e-42 176.0 200 51.5
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 5.1e-42 175.3 191 53.9
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 5.1e-42 175.3 204 52.9
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.6e-42 174.9 197 53.3
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 8.7e-42 174.5 200 48.5
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 8.7e-42 174.5 147 61.9
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 8.7e-42 174.5 201 50.7
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 8.7e-42 174.5 221 48.0
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.1e-41 174.1 192 49.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.5e-41 172.9 201 50.2
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.3e-41 172.6 198 50.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.3e-41 172.6 209 49.3
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 3.3e-41 172.6 195 50.3
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.3e-41 172.2 197 51.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.6e-41 171.8 201 48.8
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.6e-41 171.8 198 53.5
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 7.3e-41 171.4 200 50.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 7.3e-41 171.4 191 51.3
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 9.6e-41 171.0 236 45.3
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-40 170.6 199 51.3
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.3e-40 170.6 147 57.8
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 2.1e-40 169.9 201 49.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 2.8e-40 169.5 202 50.5
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.8e-40 169.5 148 56.8
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 2.8e-40 169.5 147 57.8
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.8e-40 169.5 219 45.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 3.6e-40 169.1 213 46.5
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 6.2e-40 168.3 127 65.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 6.2e-40 168.3 176 52.3
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 6.2e-40 168.3 204 49.5
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.1e-39 167.5 194 51.0
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.1e-39 167.5 196 51.0
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.1e-39 167.5 214 45.8
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.1e-39 167.5 196 49.5
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.4e-39 167.2 213 48.4
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 2.4e-39 166.4 198 47.5
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 3.1e-39 166.0 229 45.4
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 3.1e-39 166.0 204 46.6
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 4.0e-39 165.6 202 47.0
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 5.3e-39 165.2 199 49.2
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 6.9e-39 164.9 197 48.7
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 9.0e-39 164.5 189 53.4
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.2e-38 164.1 197 48.2
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.5e-38 163.7 215 46.5
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.6e-38 162.9 190 50.0
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 3.4e-38 162.5 142 59.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.4e-38 162.5 190 51.1
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.4e-38 162.5 190 51.1
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.4e-38 162.2 108 71.3
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 5.8e-38 161.8 197 49.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.7e-37 160.2 194 50.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-37 160.2 194 45.9
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 6.4e-37 158.3 194 48.5
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-36 157.1 187 49.2
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 2.4e-36 156.4 106 69.8
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 4.2e-36 155.6 145 55.2
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 4.2e-36 155.6 168 49.4
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 7.1e-36 154.8 142 56.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 9.3e-36 154.5 203 47.3
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.6e-35 153.7 195 47.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.1e-35 153.3 151 55.0
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.1e-35 153.3 168 49.4
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 6.0e-35 151.8 151 53.0
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 7.8e-35 151.4 127 60.6
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 7.8e-35 151.4 212 45.8
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 7.8e-35 151.4 198 46.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.0e-34 151.0 131 58.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.0e-34 151.0 131 58.8
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.3e-34 150.6 213 42.7
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.3e-34 150.6 142 57.0
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.7e-34 150.2 101 70.3
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.3e-34 149.8 122 61.5
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.0e-34 149.4 131 58.0
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.0e-34 149.4 99 69.7
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.9e-34 149.1 206 42.7
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 5.1e-34 148.7 136 55.9
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.1e-34 148.7 116 58.6
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 8.7e-34 147.9 203 43.3
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 8.7e-34 147.9 104 69.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 3.3e-33 146.0 194 46.4
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.3e-32 144.1 206 42.2
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.6e-32 143.7 188 46.3
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.1e-32 143.3 100 69.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.4e-31 140.6 199 44.7
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-31 140.6 147 51.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.8e-31 140.2 107 63.6
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 2.4e-31 139.8 105 62.9
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.0e-31 139.0 138 53.6
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.9e-31 138.3 181 43.1
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 9.0e-31 137.9 141 50.4
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 9.0e-31 137.9 135 53.3
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.5e-30 137.1 279 36.9
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 7.6e-30 134.8 108 59.3
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.7e-29 133.7 102 60.8
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.9e-28 130.2 90 66.7
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.9e-28 130.2 90 66.7
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 5.4e-28 128.6 86 68.6
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.7e-27 126.3 102 59.8
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.7e-24 115.9 79 67.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.0e-22 110.2 69 69.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.9e-21 106.3 160 44.4
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.1e-17 94.4 91 54.9
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.6e-16 90.5 79 51.9
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.7e-16 89.4 63 68.3
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.4e-15 86.7 164 37.2
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.5e-11 72.8 76 44.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.1e-11 72.0 192 30.7
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 5.1e-10 68.9 55 58.2
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.3e-09 66.2 73 46.6
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 9.0e-07 58.2 40 65.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.5e-06 57.4 41 61.0


User provided reference genes

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