Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1772.7 868 100.0
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1729.9 869 98.0
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1214.9 867 70.6
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1188.3 864 70.1
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1172.5 887 67.9
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1165.2 865 68.8
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 875 67.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1155.2 860 67.7
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1151.7 859 67.4
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1151.3 864 67.2
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1147.9 870 66.8
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1145.6 846 67.6
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 862 67.5
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 862 66.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 865 66.4
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1135.9 854 67.0
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 841 67.5
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1130.2 858 67.0
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 903 63.9
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 863 66.7
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 863 65.8
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 883 64.8
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 895 63.8
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1115.5 860 66.3
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1109.4 861 66.1
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1106.7 872 64.4
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1106.3 879 65.6
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1104.4 864 64.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1103.2 872 65.3
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1101.7 861 65.4
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1100.9 849 65.8
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 860 65.3
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 865 65.2
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1099.7 865 65.0
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 851 65.7
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1096.3 865 65.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1095.5 876 65.4
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1090.5 866 63.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1090.5 840 65.8
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1088.6 883 63.6
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1087.0 856 65.1
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 880 64.2
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1082.0 890 63.4
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1078.9 851 65.3
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 856 64.4
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 5.9e-312 1074.3 858 64.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 864 64.8
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 5.3e-311 1070.8 861 63.3
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 5.3e-311 1070.8 865 63.5
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 7.1e-311 1070.5 864 64.0
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 8.9e-311 1070.1 860 64.0
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 2.6e-310 1068.5 865 64.6
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 7.7e-310 1067.0 865 62.9
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 2.2e-309 1065.4 858 63.9
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 6.5e-309 1063.9 868 61.5
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.1e-308 1063.1 865 64.0
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 9.4e-308 1060.1 862 63.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 9.4e-308 1060.1 878 63.6
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 2.1e-307 1058.9 861 63.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.6e-307 1057.7 864 64.1
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 6.1e-307 1057.4 864 63.2
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.3e-306 1055.4 863 62.9
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 3.9e-306 1054.7 873 62.9
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 5.1e-306 1054.3 872 63.2
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 6.7e-306 1053.9 854 64.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 4.3e-305 1051.2 883 62.7
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.3e-304 1049.7 881 62.7
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.2e-304 1048.9 890 61.3
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 3.7e-304 1048.1 801 65.9
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 4.8e-304 1047.7 872 63.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 6.3e-304 1047.3 877 62.3
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 8.2e-304 1047.0 897 60.4
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 2.4e-303 1045.4 850 63.8
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 4.1e-303 1044.6 897 60.4
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 1.5e-302 1042.7 896 60.2
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 5.9e-302 1040.8 792 65.7
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 5.9e-302 1040.8 904 60.0
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.0e-301 1040.0 890 61.1
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.0e-301 1040.0 913 60.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 1.3e-301 1039.6 860 62.3
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 7.2e-300 1033.9 825 63.9
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 1.4e-298 1029.6 873 62.0
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 8.8e-298 1026.9 869 62.5
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 2.2e-296 1022.3 806 64.4
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 1.1e-295 1020.0 834 63.1
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.1e-295 1018.1 863 62.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 5.3e-295 1017.7 830 63.1
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 9.1e-295 1016.9 872 60.4
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.5e-294 1014.6 852 61.7
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 5.9e-294 1014.2 889 58.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 1.0e-293 1013.4 869 62.0
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.2e-293 1012.3 883 61.0
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 2.9e-293 1011.9 864 61.7
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 1.5e-292 1009.6 898 60.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 1.0e-290 1003.4 877 60.2
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.8e-290 1002.7 872 60.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 3.3e-289 998.4 888 60.4
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 5.7e-289 997.7 874 61.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.2e-288 995.7 863 60.8
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.4e-287 993.0 889 59.7
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 4.1e-287 991.5 883 59.9
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 5.3e-287 991.1 871 60.6
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 2.2e-285 985.7 877 59.5
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 2.9e-285 985.3 864 59.7
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 1.1e-284 983.4 881 60.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 1.9e-284 982.6 877 59.4
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 2.5e-284 982.2 853 59.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 3.2e-284 981.9 895 58.4
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 2.3e-282 975.7 870 59.3
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 4.0e-282 974.9 879 59.0
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 5.2e-282 974.5 628 77.2
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.5e-281 973.0 761 65.0
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 2.0e-281 972.6 839 60.5
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 3.7e-280 968.4 841 60.8
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.1e-279 966.8 885 58.9
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 9.1e-279 963.8 853 58.4
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.0e-278 962.6 799 63.0
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.9e-276 956.1 945 53.3
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 6.1e-275 951.0 817 61.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.5e-273 946.4 813 59.9
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 5.9e-270 934.5 837 58.1
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.7e-269 932.9 859 58.7
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.9e-269 932.2 864 57.3
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 6.8e-258 894.4 816 58.7
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 3.4e-257 892.1 943 52.3
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.4e-257 891.7 829 56.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 7.5e-257 891.0 876 55.4
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.2e-255 885.6 907 53.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 7.0e-255 884.4 883 54.0
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.3e-253 880.2 833 55.1
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.5e-252 876.7 897 51.6
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.6e-251 873.2 816 55.6
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.0e-250 868.6 593 70.5
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.8e-249 864.8 903 52.3
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.5e-246 855.5 898 50.6
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.3e-242 842.8 821 53.5
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 8.4e-240 834.3 898 51.7
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 4.4e-233 812.0 858 52.0
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.4e-231 807.0 626 63.9
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 6.6e-229 798.1 855 50.8
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 5.8e-225 785.0 804 51.7
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.6e-206 723.8 843 46.4
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.9e-204 716.8 573 60.9
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.5e-201 707.2 859 44.5
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 7.6e-201 704.9 853 44.8
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.9e-200 703.0 561 64.0
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 6.1e-182 642.1 610 51.3
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.5e-175 620.9 628 53.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 3.3e-172 609.8 628 53.2
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 7.2e-167 592.0 577 54.6
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.2e-159 566.2 898 40.3
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 7.5e-148 528.9 500 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.2e-142 509.2 574 46.7
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.0e-129 466.1 434 55.8
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.1e-121 441.0 607 39.0
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.2e-114 417.2 485 49.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.8e-113 412.5 499 46.3
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.9e-96 357.1 691 32.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.1e-95 355.5 402 50.7
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 2.0e-84 318.2 266 58.3
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.8e-77 295.0 228 62.3
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.4e-69 268.9 266 52.6
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 7.4e-63 246.5 177 64.4
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.8e-61 241.9 572 29.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 5.0e-59 233.8 438 32.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.8e-54 218.0 159 66.0
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 4.3e-34 151.0 190 47.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.5e-26 125.9 208 38.5
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 7.0e-21 107.1 72 63.9
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 3.5e-20 104.8 65 75.4
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 5.2e-16 90.9 74 59.5
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 4.9e-14 84.3 178 33.1
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.4e-13 82.0 118 43.2
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 7.3e-10 70.5 52 61.5


User provided reference genes

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