Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.3e-97 359.0 193 100.0
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-93 346.3 193 97.4
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 3.5e-90 335.1 193 94.8
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.7e-87 325.1 193 92.2
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-80 303.5 190 84.2
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.5e-80 303.1 189 84.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.9e-80 302.8 191 85.3
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.3e-80 302.0 195 83.6
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 9.7e-80 300.4 186 84.4
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.3e-79 300.1 193 83.4
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.6e-79 299.7 188 85.6
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.2e-79 299.3 186 84.4
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 6.3e-79 297.7 189 82.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 6.3e-79 297.7 193 83.9
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 8.2e-79 297.4 193 82.9
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-78 296.2 191 82.2
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-78 296.2 191 82.2
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.8e-78 296.2 192 82.3
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.4e-78 295.8 191 83.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 3.1e-78 295.4 191 81.7
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.1e-78 295.4 193 82.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 3.1e-78 295.4 186 83.3
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 6.9e-78 294.3 190 81.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.9e-78 294.3 182 85.2
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 6.9e-78 294.3 195 81.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 9.0e-78 293.9 193 80.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.2e-77 293.5 186 81.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.5e-77 293.1 193 80.3
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.0e-77 292.7 192 79.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 3.4e-77 292.0 187 82.9
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 4.5e-77 291.6 183 82.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 4.5e-77 291.6 191 81.7
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 5.9e-77 291.2 185 82.7
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 1.0e-76 290.4 180 83.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.3e-76 290.0 193 80.3
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.3e-76 290.0 193 80.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.3e-76 290.0 197 78.7
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.7e-76 289.7 181 82.9
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.2e-76 289.3 181 84.0
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 3.8e-76 288.5 192 80.7
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.0e-76 288.1 192 78.1
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.0e-76 288.1 192 80.2
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 5.0e-76 288.1 185 82.7
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.5e-76 287.7 187 82.9
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 6.5e-76 287.7 187 79.7
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.5e-76 287.7 191 80.1
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 6.5e-76 287.7 190 81.1
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.5e-76 287.7 191 80.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.9e-75 286.2 193 80.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 3.2e-75 285.4 189 79.9
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.2e-75 285.4 181 82.3
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 3.2e-75 285.4 190 79.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.5e-75 284.6 188 78.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 7.2e-75 284.3 188 80.3
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 7.2e-75 284.3 191 79.1
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 9.4e-75 283.9 186 79.6
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 9.4e-75 283.9 189 78.8
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.2e-74 283.5 188 78.2
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.2e-74 283.5 194 80.4
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.2e-74 283.5 186 80.6
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.6e-74 283.1 198 76.8
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.6e-74 281.6 191 78.5
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 6.1e-74 281.2 194 78.9
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 7.9e-74 280.8 195 76.9
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.0e-73 280.4 181 79.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 2.3e-73 279.3 172 83.1
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.3e-73 279.3 189 77.8
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.3e-73 279.3 189 77.8
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 3.0e-73 278.9 197 75.1
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.0e-73 278.9 190 77.4
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.0e-73 278.9 190 77.4
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.0e-73 278.9 182 80.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.0e-73 278.9 192 77.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.0e-73 278.9 189 77.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.9e-73 278.5 192 77.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 6.7e-73 277.7 177 80.8
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 6.7e-73 277.7 190 76.8
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 6.7e-73 277.7 184 78.8
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.1e-72 276.9 187 78.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.1e-72 276.9 192 77.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.1e-72 276.9 192 76.6
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.5e-72 276.6 190 76.8
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-72 276.2 191 77.5
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.5e-72 275.8 194 77.8
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.5e-72 275.8 182 79.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.3e-72 275.4 196 76.0
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.3e-72 275.4 189 77.8
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.3e-72 275.4 187 78.6
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.3e-72 275.4 181 78.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 4.3e-72 275.0 191 79.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 9.7e-72 273.9 184 77.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.3e-71 273.5 182 79.1
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.3e-71 273.5 189 76.7
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.3e-71 273.5 189 76.7
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.3e-71 273.5 189 76.7
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.3e-71 273.5 189 76.7
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.7e-71 273.1 189 77.2
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.8e-71 272.3 204 70.6
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.8e-71 272.3 183 77.0
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 6.3e-71 271.2 197 75.1
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.4e-70 270.0 200 74.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.4e-70 270.0 194 75.8
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.1e-70 268.9 223 67.7
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.1e-70 268.9 228 67.1
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 4.1e-70 268.5 237 64.6
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.9e-70 267.7 194 76.3
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.6e-69 265.8 200 73.5
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.5e-68 260.8 232 64.2
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.7e-66 255.8 190 72.1
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.4e-65 253.4 154 86.4
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 5.1e-65 251.5 162 81.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.1e-65 251.5 250 58.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 4.4e-64 248.4 158 81.0
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.4e-62 243.4 189 72.5
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.7e-60 236.5 141 85.1
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.1e-59 233.8 171 70.8
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 7.2e-59 231.1 187 64.2
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.8e-57 226.5 184 66.8
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 5.7e-56 221.5 146 78.8
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.3e-55 220.3 130 85.4
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-55 219.9 191 66.0
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.8e-55 218.4 132 83.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.4e-54 216.1 130 84.6
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.2e-52 209.5 173 59.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.5e-51 206.8 171 62.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.2e-51 205.7 135 79.3
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.8e-49 198.0 125 81.6
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.4e-48 195.7 211 57.8
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.4e-48 195.7 125 80.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 7.0e-46 188.0 140 72.1
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.1e-46 187.6 130 79.2
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.7e-44 183.3 110 86.4
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 7.2e-43 177.9 125 72.8
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.4e-38 162.9 113 77.0
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.1e-38 162.2 109 77.1
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 4.1e-38 162.2 101 82.2
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-37 159.5 102 77.5
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.2e-32 144.1 100 80.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.7e-32 141.7 99 71.7
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 2.2e-31 139.8 165 45.5
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.1e-30 137.5 90 80.0
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-30 137.1 89 82.0
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.7e-29 132.9 171 42.1
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 5.9e-29 131.7 102 68.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 7.8e-29 131.3 163 41.7
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.6e-28 127.9 81 79.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 5.6e-27 125.2 104 67.3
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 6.1e-26 121.7 184 38.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.3e-25 119.8 75 81.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.0e-25 119.0 93 66.7
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.2e-24 117.5 101 66.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 7.5e-24 114.8 95 57.9
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.6e-18 95.9 63 74.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.4e-15 85.1 111 49.5
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.4e-15 85.1 56 73.2
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.9e-14 83.6 111 48.6
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.9e-14 83.6 111 48.6
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.1e-14 81.6 111 47.7
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.2e-14 81.3 111 47.7
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.1e-13 80.1 46 84.8
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 8.9e-09 64.7 114 43.9
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.2e-08 64.3 66 62.1
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.1e-06 55.1 36 72.2


User provided reference genes

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