Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1884.8 976 100.0
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1839.7 1004 95.6
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 998 73.1
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1402.9 998 71.1
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1389.0 998 70.6
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1370.1 998 69.5
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1368.2 998 70.4
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1367.8 998 69.5
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1364.4 998 69.9
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1359.4 998 69.9
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1359.0 998 70.1
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1356.3 998 69.5
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 998 69.4
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1350.9 999 69.2
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1338.9 977 69.9
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1336.6 999 68.1
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1336.2 999 68.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1332.0 998 67.8
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 998 67.8
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 998 68.3
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1330.1 998 68.0
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1328.5 998 67.9
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1328.5 998 68.1
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1327.0 1001 66.9
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1326.2 998 68.1
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1324.3 995 67.1
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1323.1 988 68.3
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1320.8 998 67.9
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1320.4 998 67.5
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 988 67.9
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 994 68.0
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1318.9 995 66.8
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1317.8 999 67.0
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1317.8 998 67.5
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1316.2 998 66.6
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1315.8 998 66.9
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1315.1 998 67.6
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1311.2 972 68.8
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1311.2 998 67.2
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 998 67.8
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1305.0 998 66.4
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1304.3 999 66.6
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1303.9 995 67.8
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1303.5 997 67.0
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1302.0 997 67.5
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1300.8 998 66.1
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1300.4 998 66.2
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1300.0 998 66.6
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1300.0 1012 66.4
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1298.5 997 66.8
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1298.5 999 66.6
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1297.7 1023 65.7
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1297.3 999 66.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1296.6 997 66.6
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1291.9 997 66.5
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 997 66.4
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 1004 66.9
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1290.8 998 66.0
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1286.2 969 67.3
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1284.2 999 65.5
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1283.9 993 66.1
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1281.9 1000 66.3
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1281.5 1081 62.8
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1280.0 970 67.8
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1278.8 998 64.9
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1278.1 997 66.2
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1275.4 998 65.9
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1274.2 998 64.4
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1274.2 998 65.6
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1273.5 998 64.3
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1270.4 999 64.9
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1270.0 994 65.8
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1252.3 998 63.7
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1252.3 998 64.2
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1248.4 998 64.7
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1246.5 998 65.3
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1240.7 968 66.0
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1239.9 998 63.3
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1238.0 968 64.3
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1233.0 998 63.2
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1231.9 912 69.0
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1230.3 984 64.2
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1230.3 984 64.2
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1229.2 976 65.5
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1228.4 999 63.1
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1224.9 999 63.7
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1220.7 1001 63.7
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1218.8 1000 62.7
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1216.4 999 62.8
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1215.7 1000 62.5
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1214.9 1000 62.9
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1207.6 1001 62.3
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1207.2 997 63.0
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1201.8 926 66.5
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1194.9 1031 60.7
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1193.3 975 62.8
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1160.2 947 64.9
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1158.7 998 61.0
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1152.1 969 62.6
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1146.7 998 59.3
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1123.2 864 67.1
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 1.5e-309 1066.2 1006 57.5
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 1.8e-307 1059.3 920 61.0
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.2e-295 1020.0 898 60.8
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 2.6e-290 1002.3 998 53.6
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 1.9e-269 932.9 725 67.0
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 1.4e-267 926.8 1004 48.6
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 8.4e-265 917.5 1003 49.7
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 2.7e-263 912.5 1006 48.0
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.7e-263 912.5 1003 49.7
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 2.5e-261 906.0 1005 49.0
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 2.8e-252 875.9 821 56.3
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 5.7e-245 851.7 813 54.2
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.4e-240 837.0 743 59.2
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 5.7e-237 825.1 613 68.5
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 7.4e-237 824.7 991 44.9
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 8.5e-233 811.2 600 68.8
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.9e-232 810.1 615 66.8
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 3.7e-204 716.1 1078 37.6
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 4.1e-203 712.6 914 43.2
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 7.6e-165 585.5 433 67.9
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 3.2e-115 420.6 314 67.2
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 2.1e-114 417.9 357 61.3
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 4.7e-114 416.8 304 68.8
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 6.5e-108 396.4 1028 29.6
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-83 315.8 270 60.7
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-83 315.8 270 60.7
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.9e-79 301.2 1106 27.1
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 9.9e-56 223.0 245 46.9
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 7.1e-38 163.7 958 23.1
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.0e-28 133.3 116 64.7
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 3.0e-28 131.7 123 52.8
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 3.7e-26 124.8 122 52.5
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 7.9e-21 107.1 92 56.5
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 3.3e-19 101.7 81 63.0
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.9e-14 85.9 64 65.6


User provided reference genes

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