Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 0.0e+00 1441.8 806 100.0
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 0.0e+00 1409.0 806 95.7
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 4.3e-238 828.6 811 62.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 2.7e-224 782.7 821 59.7
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.1e-208 729.9 815 57.1
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 6.0e-208 728.4 803 58.4
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 6.6e-207 724.9 798 59.6
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 3.3e-206 722.6 798 59.6
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.9e-202 708.8 790 56.8
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.4e-201 706.4 791 57.0
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 4.2e-201 705.7 810 55.2
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 6.6e-199 698.4 801 54.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.5e-195 687.2 823 57.0
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 2.4e-193 679.9 817 56.5
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 9.3e-193 677.9 791 55.0
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.2e-192 677.6 808 57.3
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 2.5e-190 669.8 805 53.9
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.6e-189 667.2 799 53.8
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 4.0e-188 662.5 727 56.8
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.0e-186 657.9 802 53.6
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.5e-185 653.3 802 52.2
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 3.3e-182 642.9 788 52.7
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 4.8e-181 639.0 811 52.2
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.1e-180 637.9 808 51.2
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.9e-180 635.2 797 55.5
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 2.2e-178 630.2 788 51.6
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.5e-177 625.5 803 51.2
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 7.2e-177 625.2 784 51.3
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-176 624.4 802 51.1
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-176 624.4 930 46.6
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.6e-176 624.0 784 53.8
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.1e-176 623.6 798 54.6
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.1e-176 623.6 785 51.5
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-175 621.3 808 53.7
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 2.3e-175 620.2 784 53.3
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 5.3e-172 609.0 796 49.6
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 6.9e-172 608.6 784 53.8
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.6e-171 606.7 801 50.6
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.7e-170 604.0 793 50.6
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.2e-170 603.6 828 49.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 2.9e-170 603.2 831 49.7
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 8.5e-170 601.7 845 49.3
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 2.5e-169 600.1 803 53.2
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.2e-168 597.8 788 49.7
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 6.1e-168 595.5 786 52.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.1e-167 592.4 712 54.9
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 6.7e-167 592.0 807 50.3
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 8.8e-167 591.7 796 50.3
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.1e-166 591.3 784 49.2
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 2.0e-166 590.5 782 49.1
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.7e-165 587.4 792 48.7
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 3.7e-165 586.3 786 52.3
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.7e-165 586.3 793 49.7
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 4.8e-165 585.9 788 50.3
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 3.1e-164 583.2 785 51.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 3.1e-164 583.2 814 48.5
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 4.1e-164 582.8 794 48.6
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.3e-164 582.4 788 50.0
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 5.3e-164 582.4 806 48.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 9.1e-164 581.6 797 52.7
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.6e-163 580.1 793 49.4
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.5e-163 579.3 711 53.4
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 5.9e-163 578.9 797 50.8
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.7e-162 577.4 797 48.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.5e-161 573.5 798 51.4
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 9.4e-161 571.6 792 51.5
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.7e-160 570.1 813 48.6
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.3e-158 563.1 812 48.2
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.7e-157 560.8 781 48.0
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 6.3e-157 558.9 787 50.1
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.3e-156 555.8 784 50.8
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.0e-154 551.6 798 50.5
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.3e-154 551.2 718 51.4
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 2.9e-154 550.1 805 50.4
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.2e-153 546.2 798 51.0
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 7.2e-153 545.4 710 49.9
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 9.4e-153 545.0 800 46.4
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.0e-151 541.6 785 48.3
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 4.0e-151 539.7 797 48.6
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 9.7e-150 535.0 801 46.6
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 9.7e-150 535.0 796 45.1
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.1e-148 529.6 800 45.6
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 4.1e-148 529.6 767 48.1
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.5e-145 520.4 804 49.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 2.5e-145 520.4 785 46.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.2e-144 518.1 855 46.9
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 6.1e-144 515.8 533 59.5
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 2.8e-141 506.9 760 44.9
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 2.4e-140 503.8 802 45.6
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 7.0e-140 502.3 831 45.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 7.7e-139 498.8 787 47.5
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.2e-136 491.5 721 47.4
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.0e-135 488.4 783 47.5
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 3.0e-135 486.9 623 52.2
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 3.0e-135 486.9 623 52.0
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 3.0e-135 486.9 791 45.9
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.1e-132 478.4 625 53.6
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 4.1e-132 476.5 629 49.0
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.5e-131 473.4 764 45.3
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.5e-131 473.0 750 43.1
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.3e-130 470.7 749 43.3
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.6e-129 466.1 808 42.7
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 4.7e-128 463.0 690 50.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 8.9e-127 458.8 725 45.0
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.7e-125 453.4 733 44.6
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.4e-124 449.5 753 43.3
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 7.0e-124 449.1 800 41.1
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.6e-123 448.0 785 45.2
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.7e-123 447.2 790 41.4
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 3.5e-123 446.8 784 41.2
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 3.5e-123 446.8 784 41.2
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.6e-123 446.4 749 43.8
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 5.9e-123 446.0 784 41.2
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 5.9e-123 446.0 717 44.8
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 2.3e-122 444.1 800 40.9
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 8.6e-122 442.2 792 41.3
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 7.3e-121 439.1 496 55.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.2e-120 438.3 750 43.2
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.0e-119 435.3 728 44.1
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 5.2e-119 433.0 753 40.5
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.7e-117 427.9 800 39.6
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 2.5e-113 414.1 747 40.2
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 2.8e-112 410.6 765 39.3
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 3.1e-111 407.1 753 39.7
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 8.9e-111 405.6 843 38.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.0e-110 404.4 711 41.6
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-109 401.0 754 39.0
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 3.7e-109 400.2 824 37.3
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 6.4e-109 399.4 790 40.6
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 8.3e-109 399.1 672 41.7
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.9e-108 397.9 364 61.0
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.6e-107 394.8 777 39.9
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 1.4e-103 381.7 788 39.3
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 6.8e-103 379.4 384 59.1
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.6e-99 368.2 368 59.5
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.0e-98 364.0 476 48.5
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 1.4e-84 318.5 613 40.0
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 8.1e-80 302.8 714 35.4
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.8e-72 277.7 385 47.5
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 2.7e-67 261.2 390 45.9
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 9.0e-63 246.1 784 31.9
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 4.5e-62 243.8 340 49.1
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 7.2e-60 236.5 382 43.5
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 3.3e-57 227.6 251 54.6
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.5e-54 218.8 399 41.9
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 3.9e-50 204.1 324 41.4
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 9.7e-49 199.5 411 40.6
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-44 186.0 196 60.2
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.3e-34 151.8 176 55.7
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-33 149.1 140 57.1
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.8e-29 134.4 138 54.3
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 5.5e-28 130.6 183 48.6
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 5.5e-20 104.0 118 51.7
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 1.2e-19 102.8 109 56.0
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.0e-18 99.8 403 29.3
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.8e-18 96.7 194 36.6
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 7.5e-17 93.6 276 31.5
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.7e-16 92.4 325 29.2
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 3.7e-16 91.3 134 44.8
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-14 85.9 131 45.8
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.6e-13 80.5 124 44.4
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 5.6e-12 77.4 203 30.5
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.8e-10 70.5 89 48.3
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.4e-09 68.2 144 43.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.3e-08 66.2 95 48.4


User provided reference genes

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