Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.4e-95 352.8 169 100.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 5.1e-77 291.2 147 95.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.7e-75 285.0 163 85.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.2e-52 210.3 127 78.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.6e-52 209.1 125 82.4
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.7e-52 207.2 123 81.3
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.3e-51 206.8 119 80.7
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 4.8e-51 204.9 127 75.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.8e-51 204.9 130 75.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 4.8e-51 204.9 130 75.4
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.4e-50 202.6 159 62.3
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.4e-50 202.6 159 62.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.4e-50 202.6 134 73.9
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 7.0e-50 201.1 123 78.9
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 9.1e-50 200.7 133 70.7
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 9.1e-50 200.7 126 73.8
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.6e-49 199.9 128 75.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.6e-49 199.9 128 75.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.6e-49 199.9 133 70.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.0e-49 199.5 123 77.2
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 3.5e-49 198.7 149 67.1
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 7.7e-49 197.6 127 75.6
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.0e-48 197.2 119 75.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.7e-48 196.4 124 73.4
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.2e-48 196.1 131 69.5
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.9e-48 195.7 125 74.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.8e-48 195.3 165 58.8
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 6.5e-48 194.5 124 72.6
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 8.5e-48 194.1 128 71.9
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.1e-47 193.7 122 75.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.5e-47 193.4 129 72.1
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.5e-47 193.4 129 72.1
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.5e-47 193.4 119 79.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.9e-47 193.0 150 66.7
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.9e-47 193.0 118 77.1
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.5e-47 192.6 147 67.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.5e-47 192.6 123 72.4
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.5e-47 192.6 136 69.9
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.5e-47 191.4 126 72.2
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 7.2e-47 191.0 136 68.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 7.2e-47 191.0 119 73.1
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.2e-47 191.0 140 67.1
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 7.2e-47 191.0 133 72.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.2e-47 191.0 133 72.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.2e-47 191.0 133 72.2
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 7.2e-47 191.0 135 70.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 9.4e-47 190.7 124 71.0
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.4e-47 190.7 135 70.4
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.2e-46 190.3 135 70.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.6e-46 189.9 129 70.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.6e-46 189.9 135 70.4
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.1e-46 189.5 122 74.6
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.7e-46 188.3 123 74.0
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 6.1e-46 188.0 126 73.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.1e-46 188.0 133 71.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.1e-46 188.0 126 71.4
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 8.0e-46 187.6 135 68.9
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.0e-45 187.2 134 68.7
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.4e-45 186.8 122 73.0
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.8e-45 186.4 136 67.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.8e-45 186.4 119 75.6
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.3e-45 186.0 138 65.9
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.3e-45 186.0 138 68.8
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.0e-45 185.7 138 65.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.0e-45 185.7 123 71.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.0e-45 185.7 128 71.9
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.0e-45 185.7 119 77.3
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 4.0e-45 185.3 122 72.1
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.0e-45 185.3 122 72.1
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 4.0e-45 185.3 168 57.1
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.0e-45 185.3 132 68.9
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.8e-45 184.5 126 69.8
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 8.8e-45 184.1 119 74.8
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.2e-44 183.7 126 69.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.2e-44 183.7 122 70.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.2e-44 183.7 122 71.3
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-44 183.7 126 70.6
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.5e-44 183.3 126 69.8
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.5e-44 183.3 131 68.7
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.5e-44 183.3 131 68.7
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.5e-44 183.3 168 54.8
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-44 183.0 122 71.3
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-44 183.0 122 71.3
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.0e-44 183.0 126 67.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.6e-44 182.6 131 66.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.6e-44 182.6 168 55.4
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.6e-44 182.6 128 70.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.6e-44 182.6 119 73.9
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 3.4e-44 182.2 134 65.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.4e-44 182.2 128 70.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.4e-44 181.8 132 67.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.4e-44 181.8 124 69.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 5.7e-44 181.4 122 70.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.7e-44 181.4 119 73.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 5.7e-44 181.4 122 69.7
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.5e-44 181.0 118 73.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 9.8e-44 180.6 132 67.4
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 9.8e-44 180.6 126 69.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.3e-43 180.3 122 69.7
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.7e-43 179.9 139 63.3
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.8e-43 179.1 131 65.6
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.8e-43 179.1 131 68.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.7e-43 178.7 146 63.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.8e-43 178.3 147 61.2
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 6.3e-43 177.9 127 65.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.3e-43 177.9 135 63.0
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 8.3e-43 177.6 126 66.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.1e-42 177.2 122 68.0
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.8e-42 176.4 136 62.5
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.8e-42 176.4 136 62.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.8e-42 176.4 135 62.2
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.2e-41 173.7 122 68.0
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.6e-41 173.3 152 57.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.6e-41 173.3 122 68.0
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.6e-41 173.3 121 69.4
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 3.5e-41 172.2 109 76.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.5e-41 172.2 131 64.1
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.5e-41 172.2 137 65.0
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.9e-41 171.4 133 62.4
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.3e-40 169.5 128 64.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.8e-40 168.7 128 62.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.6e-40 167.9 132 63.6
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.1e-39 167.2 123 71.5
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.9e-39 166.4 128 64.8
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.9e-39 166.4 145 57.2
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.3e-39 165.6 109 72.5
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.6e-38 163.3 133 63.9
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.8e-38 162.5 126 59.5
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 4.7e-38 161.8 179 50.3
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 6.1e-38 161.4 131 64.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.0e-38 161.0 135 56.3
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.0e-37 160.6 132 62.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.0e-37 158.7 127 59.8
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.4e-36 155.6 125 61.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.8e-36 154.1 122 58.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.1e-34 149.1 127 55.9
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.0e-33 146.4 114 61.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.5e-33 145.2 99 71.7
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.9e-33 144.8 124 58.9
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 3.9e-32 142.1 123 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.9e-32 142.1 116 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.9e-32 142.1 116 57.8
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.6e-30 136.7 89 70.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.4e-29 133.7 125 54.4
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.5e-28 130.2 165 44.8
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.0e-28 129.8 110 58.2
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.6e-28 129.4 110 58.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.8e-28 128.3 93 67.7
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.1e-26 122.1 92 64.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.0e-25 118.2 124 52.4
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 8.6e-24 114.4 78 71.8
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.1e-22 109.8 128 43.8
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 6.8e-13 78.2 122 40.2
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-10 70.9 59 59.3
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.0e-08 62.8 49 61.2


User provided reference genes

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