Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0131 Papaver somniferum HOM05D001690 ORTHO05D009096 5.1e-128 461.1 229 100.0
PSO832G0212 Papaver somniferum HOM05D001690 ORTHO05D009096 7.1e-122 440.7 227 96.9
Dinv30998 Davidia involucrata HOM05D001690 ORTHO05D009096 3.6e-57 225.7 195 58.5
Dinv31105 Davidia involucrata HOM05D001690 ORTHO05D009096 3.6e-57 225.7 195 58.5
GSVIVG01020171001 Vitis vinifera HOM05D001690 ORTHO05D009096 1.4e-56 223.8 169 63.3
Atru.chr11.1963 Acer truncatum HOM05D001690 ORTHO05D009096 2.3e-56 223.0 202 55.9
Hma1.2p1_0160F.1_g070590 Hydrangea macrophylla HOM05D001690 ORTHO05D009096 3.0e-56 222.6 142 70.4
CSS0041586 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 4.0e-56 222.2 216 56.5
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 4.0e-56 222.2 142 70.4
Gohir.D02G165700 Gossypium hirsutum HOM05D001690 ORTHO05D009096 6.8e-56 221.5 226 54.0
FvH4_4g35000 Fragaria vesca HOM05D001690 ORTHO05D009096 1.5e-55 220.3 224 53.1
Gohir.A03G142400 Gossypium hirsutum HOM05D001690 ORTHO05D009096 1.5e-55 220.3 226 54.0
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 2.0e-55 219.9 150 66.7
RcHm_v2.0_Chr4g0444521 Rosa chinensis HOM05D001690 ORTHO05D009096 4.4e-55 218.8 218 54.1
FAN12G1851 Fragaria x ananassa HOM05D001690 ORTHO05D009096 5.7e-55 218.4 224 52.7
Gorai.005G185800 Gossypium raimondii HOM05D001690 ORTHO05D009096 5.7e-55 218.4 225 53.8
Thecc.02G242600 Theobroma cacao HOM05D001690 ORTHO05D009096 9.8e-55 217.6 223 52.5
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 1.7e-54 216.9 177 59.9
FAN07G2318 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.7e-54 216.9 191 59.2
Ciclev10033984m.g Citrus clementina HOM05D001690 ORTHO05D009096 2.2e-54 216.5 196 56.6
Haze_12139 Corylus avellana HOM05D001690 ORTHO05D009096 2.8e-54 216.1 160 63.1
Duzib248G1036 Durio zibethinus HOM05D001690 ORTHO05D009096 3.7e-54 215.7 154 64.3
Lj2g0027896 Lotus japonicus HOM05D001690 ORTHO05D009096 6.3e-54 214.9 165 59.4
Lsat_1_v5_gn_4_6521 Lactuca sativa HOM05D001690 ORTHO05D009096 8.3e-54 214.5 224 50.0
Peaxi162Scf00421g00710 Petunia axillaris HOM05D001690 ORTHO05D009096 8.3e-54 214.5 160 61.2
Prupe.1G259700 Prunus persica HOM05D001690 ORTHO05D009096 8.3e-54 214.5 229 52.0
DCAR_026553 Daucus carota HOM05D001690 ORTHO05D009096 1.1e-53 214.2 208 51.9
Manes.01G196800 Manihot esculenta HOM05D001690 ORTHO05D009096 1.1e-53 214.2 205 55.6
Hund05955 Selenicereus undatus HOM05D001690 ORTHO05D009096 1.1e-53 214.2 143 66.4
FAN22G0616 Fragaria x ananassa HOM05D001690 ORTHO05D009096 3.1e-53 212.6 224 54.0
Sabra08G0111900 Salix brachista HOM05D001690 ORTHO05D009096 4.1e-53 212.2 220 52.7
CARHR024380 Cardamine hirsuta HOM05D001690 ORTHO05D009096 5.4e-53 211.8 192 54.7
MD13G1087000 Malus domestica HOM05D001690 ORTHO05D009096 5.4e-53 211.8 221 53.8
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 7.0e-53 211.5 142 67.6
HanXRQChr04g0103621 Helianthus annuus HOM05D001690 ORTHO05D009096 9.1e-53 211.1 213 49.8
AL1G37900 Arabidopsis lyrata HOM05D001690 ORTHO05D009096 1.2e-52 210.7 211 52.1
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.2e-52 210.7 171 58.5
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 2.7e-52 209.5 199 54.3
AUR62026581 Chenopodium quinoa HOM05D001690 ORTHO05D009096 3.5e-52 209.1 180 54.4
Medtr5g035310 Medicago truncatula HOM05D001690 ORTHO05D009096 3.5e-52 209.1 142 66.2
Sp1g21410 Schrenkiella parvula HOM05D001690 ORTHO05D009096 3.5e-52 209.1 215 51.6
QL03p062480 Quercus lobata HOM05D001690 ORTHO05D009096 4.5e-52 208.8 172 56.4
Aqoxy3G03080 Aquilegia oxysepala HOM05D001690 ORTHO05D009096 5.9e-52 208.4 142 65.5
Lalb_Chr09g0326501 Lupinus albus HOM05D001690 ORTHO05D009096 5.9e-52 208.4 142 64.8
AUR62039406 Chenopodium quinoa HOM05D001690 ORTHO05D009096 7.7e-52 208.0 142 64.1
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 1.0e-51 207.6 196 54.1
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 1.0e-51 207.6 196 54.1
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 1.0e-51 207.6 142 65.5
Aa31LG7G7870 Aethionema arabicum HOM05D001690 ORTHO05D009096 1.7e-51 206.8 191 52.9
arahy.Tifrunner.gnm1.ann1.00SZA6 Arachis hypogaea HOM05D001690 ORTHO05D009096 2.3e-51 206.5 142 66.2
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 2.3e-51 206.5 215 50.7
Cc11_g14250 Coffea canephora HOM05D001690 ORTHO05D009096 2.3e-51 206.5 151 62.3
Lj3C1049G3 Lonicera japonica HOM05D001690 ORTHO05D009096 2.3e-51 206.5 184 56.5
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 2.9e-51 206.1 208 49.5
MSTRG.621 Avicennia marina HOM05D001690 ORTHO05D009096 3.8e-51 205.7 148 62.8
Cpa.g.sc5.350 Carica papaya HOM05D001690 ORTHO05D009096 3.8e-51 205.7 188 55.9
SalBow2G0686 Salvia bowleyana HOM05D001690 ORTHO05D009096 3.8e-51 205.7 142 64.8
SalBow2G2592 Salvia bowleyana HOM05D001690 ORTHO05D009096 3.8e-51 205.7 142 64.8
Actinidia08182 Actinidia chinensis HOM05D001690 ORTHO05D009096 5.0e-51 205.3 231 51.5
AT1G24095 Arabidopsis thaliana HOM05D001690 ORTHO05D009096 5.0e-51 205.3 144 65.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 8.6e-51 204.5 212 50.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 8.6e-51 204.5 214 50.9
TWI18G1158 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 8.6e-51 204.5 185 54.6
Thhalv10008745m.g Eutrema salsugineum HOM05D001690 ORTHO05D009096 1.5e-50 203.8 214 51.4
MD16G1087300 Malus domestica HOM05D001690 ORTHO05D009096 1.9e-50 203.4 218 50.5
Carub.0001s2353 Capsella rubella HOM05D001690 ORTHO05D009096 3.3e-50 202.6 221 51.6
PGSC0003DMG400015577 Solanum tuberosum HOM05D001690 ORTHO05D009096 4.2e-50 202.2 149 59.7
Hund25316 Selenicereus undatus HOM05D001690 ORTHO05D009096 5.5e-50 201.8 150 62.0
Sc14g0008550 Simmondsia chinensis HOM05D001690 ORTHO05D009096 7.2e-50 201.4 198 51.5
unitig_699.g19928 Utricularia gibba HOM05D001690 ORTHO05D009096 9.5e-50 201.1 164 61.0
CANSAT25G2126 Cannabis sativa HOM05D001690 ORTHO05D009096 1.2e-49 200.7 139 64.7
CDE04G3384 Ceratophyllum demersum HOM05D001690 ORTHO05D009096 1.2e-49 200.7 160 59.4
Sopen05g002120 Solanum pennellii HOM05D001690 ORTHO05D009096 1.2e-49 200.7 149 59.7
CANSAT35G0663 Cannabis sativa HOM05D001690 ORTHO05D009096 2.1e-49 199.9 139 64.0
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 3.6e-49 199.1 210 50.0
Migut.L01445 Erythranthe guttata HOM05D001690 ORTHO05D009096 3.6e-49 199.1 214 50.5
Potri.008G147000 Populus trichocarpa HOM05D001690 ORTHO05D009096 3.6e-49 199.1 217 50.7
vmacro01197 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 1.0e-48 197.6 276 44.2
Zm00001eb371950 Zea mays HOM05D001690 ORTHO05D009096 1.4e-48 197.2 187 51.9
Nitab4.5_0005722g0030 Nicotiana tabacum HOM05D001690 ORTHO05D009096 1.8e-48 196.8 244 48.8
Nitab4.5_0000257g0260 Nicotiana tabacum HOM05D001690 ORTHO05D009096 2.3e-48 196.4 244 47.5
THA.LOC109116916 Tarenaya hassleriana HOM05D001690 ORTHO05D009096 3.0e-48 196.1 147 59.9
CAN.G1160.1 Capsicum annuum HOM05D001690 ORTHO05D009096 4.0e-48 195.7 216 50.9
Psat2g111480 Pisum sativum HOM05D001690 ORTHO05D009096 8.9e-48 194.5 138 64.5
CsaV3_5G031860 Cucumis sativus L. HOM05D001690 ORTHO05D009096 1.5e-47 193.7 206 51.9
SGA_v2.0_scaffold8G04246 Striga asiatica HOM05D001690 ORTHO05D009096 1.5e-47 193.7 205 51.2
CiPaw.06G074800 Carya illinoinensis HOM05D001690 ORTHO05D009096 2.2e-46 189.9 126 67.5
Rhsim12G0050200 Rhododendron simsii HOM05D001690 ORTHO05D009096 2.2e-46 189.9 268 43.7
HPP92_017336 Vanilla planifolia HOM05D001690 ORTHO05D009096 2.8e-46 189.5 181 51.4
Glyma.02G037900 Glycine max HOM05D001690 ORTHO05D009096 4.9e-46 188.7 142 60.6
Sed0019838 Sechium edule HOM05D001690 ORTHO05D009096 1.1e-45 187.6 201 50.7
SEGI_04544 Sequoiadendron giganteum HOM05D001690 ORTHO05D009096 1.1e-45 187.6 142 59.9
ClCG05G025030 Citrullus lanatus HOM05D001690 ORTHO05D009096 2.0e-44 183.3 249 42.2
VMungo1215G1997 Vigna mungo HOM05D001690 ORTHO05D009096 2.0e-44 183.3 142 57.7
MBI14_g12607_MAGBIO Magnolia biondii HOM05D001690 ORTHO05D009096 5.9e-44 181.8 139 61.2
EL10Ac6g13729 Beta vulgaris HOM05D001690 ORTHO05D009096 2.9e-43 179.5 155 55.5
TPR.G13490 Trifolium pratense HOM05D001690 ORTHO05D009096 6.6e-43 178.3 125 65.6
SMO147G0177 Selaginella moellendorffii HOM05D001690 ORTHO05D009096 6.8e-40 168.3 157 54.1
vmacro12906 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 6.8e-40 168.3 139 57.6
Pp3c10_1390 Physcomitrium patens HOM05D001690 ORTHO05D009096 1.2e-39 167.5 151 51.7
CBR_g38731 Chara braunii HOM05D001690 ORTHO05D009096 2.7e-36 156.4 142 51.4
Phvul.002G059700 Phaseolus vulgaris HOM05D001690 ORTHO05D009096 4.6e-36 155.6 142 53.5
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-35 154.5 111 66.7
Psat2g111840 Pisum sativum HOM05D000009 ORTHO05D000008 1.4e-32 144.1 101 66.3
EL10Ac9g21122 Beta vulgaris HOM05D001690 ORTHO05D009096 4.1e-29 132.5 95 64.2
Nn4g22883 Nelumbo nucifera HOM05D001690 ORTHO05D009096 3.4e-23 112.8 78 62.8
MELO3C012024.2 Cucumis melo HOM05D001690 ORTHO05D009096 5.4e-21 105.5 141 41.8
EL10Ac5g10984 Beta vulgaris HOM05D001690 ORTHO05D009096 6.0e-20 102.1 69 65.2
Solyc05g006100.4 Solanum lycopersicum HOM05D001690 ORTHO05D009096 7.8e-20 101.7 149 37.6
EL10Ac6g14125 Beta vulgaris HOM05D001690 ORTHO05D009096 5.2e-16 89.0 68 57.4
CSS0030261 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 2.9e-14 83.2 58 62.1
EL10Ac5g11364 Beta vulgaris HOM05D001690 ORTHO05D009096 1.2e-12 77.8 69 53.6
DCAR_025501 Daucus carota HOM05D006629 ORTHO05D008430 4.6e-12 75.9 140 30.7
SMO266G0086 Selaginella moellendorffii HOM05D006629 ORTHO05D008430 1.7e-11 73.9 131 30.5
PGR102G3125 Punica granatum HOM05D006629 ORTHO05D008430 2.3e-11 73.6 133 32.3
BcaC05g26305 Brassica carinata HOM05D001690 ORTHO05D009096 6.6e-11 72.0 46 60.9
Rhsim08G0214800 Rhododendron simsii HOM05D006629 ORTHO05D008430 6.6e-11 72.0 119 33.6
ATR0322G059 Amborella trichopoda HOM05D006629 ORTHO05D008430 1.1e-10 71.2 146 28.8
Hund00536 Selenicereus undatus HOM05D006629 ORTHO05D008430 2.5e-10 70.1 147 32.0
CSS0009902 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 3.3e-10 69.7 119 31.9
Lj5C70G0 Lonicera japonica HOM05D006629 ORTHO05D008430 3.3e-10 69.7 140 30.7
Oeu052266.1 Olea europaea HOM05D006629 ORTHO05D008430 3.3e-10 69.7 119 32.8
QL05p028345 Quercus lobata HOM05D006629 ORTHO05D008430 3.3e-10 69.7 119 31.9
Cre14.g622750 Chlamydomonas reinhardtii HOM05D006629 ORTHO05D008430 4.3e-10 69.3 157 28.0
Eucgr.F02111 Eucalyptus grandis HOM05D006629 ORTHO05D008430 4.3e-10 69.3 119 31.9
Eucgr.F02534 Eucalyptus grandis HOM05D006629 ORTHO05D008430 4.3e-10 69.3 119 31.9
TWI18G0931 Tripterygium wilfordii HOM05D006629 ORTHO05D008430 4.3e-10 69.3 123 30.9
Ciclev10026597m.g Citrus clementina HOM05D006629 ORTHO05D008430 5.6e-10 68.9 119 31.9
PRCOL_00001525 Prasinoderma coloniale HOM05D006629 ORTHO05D008430 5.6e-10 68.9 132 28.0
MSTRG.11130 Avicennia marina HOM05D006629 ORTHO05D008430 9.6e-10 68.2 149 30.2
Gohir.A06G186400 Gossypium hirsutum HOM05D006629 ORTHO05D008430 9.6e-10 68.2 119 32.8
Migut.I00787 Erythranthe guttata HOM05D006629 ORTHO05D008430 1.3e-09 67.8 119 31.1
Gohir.D06G192700 Gossypium hirsutum HOM05D006629 ORTHO05D008430 1.3e-09 67.8 119 31.9
Gorai.010G226500 Gossypium raimondii HOM05D006629 ORTHO05D008430 1.3e-09 67.8 119 31.9
Rhsim04G0187300 Rhododendron simsii HOM05D006629 ORTHO05D008430 1.3e-09 67.8 119 31.9
Thecc.06G069100 Theobroma cacao HOM05D006629 ORTHO05D008430 2.1e-09 67.0 119 31.9
SalBow2G3434 Salvia bowleyana HOM05D006629 ORTHO05D008430 3.6e-09 66.2 119 29.4
SGA_v2.0_scaffold5G02676 Striga asiatica HOM05D006629 ORTHO05D008430 3.6e-09 66.2 141 27.7
AUR62016355 Chenopodium quinoa HOM05D006629 ORTHO05D008430 4.8e-09 65.9 118 32.2
ECA234G2539 Erigeron canadensis HOM05D006629 ORTHO05D008430 4.8e-09 65.9 133 30.8
PSO017G2975 Papaver somniferum HOM05D006629 ORTHO05D008430 6.2e-09 65.5 119 31.9
CSS0049498 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 8.1e-09 65.1 116 30.2
HanXRQChr03g0073251 Helianthus annuus HOM05D001690 ORTHO05D009096 1.4e-08 64.3 45 62.2
unitig_52.g17452 Utricularia gibba HOM05D006629 ORTHO05D008430 1.4e-08 64.3 119 28.6
PSO170G1412 Papaver somniferum HOM05D006629 ORTHO05D008430 3.1e-08 63.2 124 32.3
CDE06G1467 Ceratophyllum demersum HOM05D006629 ORTHO05D008430 4.0e-08 62.8 167 28.7
MCO16G483 Micromonas commoda HOM05D006629 ORTHO05D008430 4.0e-08 62.8 120 30.8
PRCOL_00002946 Prasinoderma coloniale HOM05D006629 ORTHO05D049056 6.9e-08 62.0 140 32.1
Pp3c1_15690 Physcomitrium patens HOM05D006629 ORTHO05D008430 2.6e-07 60.1 131 29.8
Peaxi162Scf00332g00758 Petunia axillaris HOM05D006629 ORTHO05D008430 7.6e-07 58.5 112 31.2


User provided reference genes

Program Settings