Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 0.0e+00 1573.9 873 100.0
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 0.0e+00 1474.5 873 92.9
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.0e-257 892.9 872 57.9
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.6e-254 883.2 865 57.8
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 5.6e-252 874.8 859 57.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.1e-251 872.8 859 59.1
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.0e-250 868.6 863 60.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.2e-248 862.8 876 56.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.8e-248 862.1 855 59.3
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 2.4e-247 859.4 871 58.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.5e-246 855.5 852 57.7
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 7.8e-246 854.4 870 57.4
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 7.8e-246 854.4 851 57.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.3e-244 849.0 866 56.1
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 7.3e-244 847.8 861 55.7
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.3e-243 847.0 849 56.7
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.3e-243 847.0 865 56.4
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.1e-243 846.3 856 59.9
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.2e-243 844.7 860 55.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 8.1e-243 844.3 863 56.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 8.1e-243 844.3 860 55.9
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.8e-242 843.2 859 57.5
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.1e-242 842.4 860 55.8
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-241 840.5 857 55.4
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.6e-241 837.8 863 55.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 7.6e-241 837.8 860 55.6
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.9e-240 835.9 859 57.4
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.4e-240 834.7 866 55.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 8.4e-240 834.3 857 56.2
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 8.4e-240 834.3 860 55.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.1e-239 833.9 867 55.9
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.1e-239 833.9 869 55.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 9.3e-239 830.9 866 55.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.2e-238 830.5 864 55.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.6e-238 830.1 858 55.4
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-238 829.7 862 55.6
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.5e-238 828.9 857 56.1
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.5e-238 828.9 862 55.6
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 4.6e-238 828.6 854 55.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 6.0e-238 828.2 864 55.2
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 7.9e-238 827.8 865 55.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.0e-237 825.9 855 55.3
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.1e-237 825.1 851 59.1
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 8.7e-237 824.3 861 55.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-236 823.5 857 58.2
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.5e-236 823.5 859 55.1
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 3.3e-236 822.4 860 54.5
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.3e-236 822.4 861 56.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 4.3e-236 822.0 861 54.7
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 6.9e-234 814.7 856 52.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 6.9e-234 814.7 858 55.4
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.0e-233 813.1 863 54.9
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-230 803.5 860 53.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.6e-230 803.5 854 52.8
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.3e-229 800.4 855 53.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 6.7e-229 798.1 858 53.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.1e-228 797.3 859 53.2
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 2.4e-226 789.6 838 55.5
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 3.1e-226 789.3 858 53.7
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.0e-225 786.6 850 53.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.4e-225 785.8 853 52.5
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.5e-225 785.4 851 57.7
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.8e-225 785.0 859 53.2
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.2e-224 783.1 849 53.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 5.0e-224 781.9 863 53.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 6.5e-224 781.6 857 52.6
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.5e-223 779.6 868 52.5
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.6e-222 775.4 847 54.1
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.8e-221 773.5 859 51.5
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.0e-221 772.7 861 53.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.0e-221 772.7 861 53.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 5.1e-221 771.9 871 53.5
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 6.7e-221 771.5 866 53.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.9e-220 770.0 859 53.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.9e-220 770.0 861 52.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.3e-220 769.2 862 53.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.3e-219 767.3 859 51.9
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.3e-219 767.3 878 51.3
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.6e-217 759.6 869 52.4
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 5.9e-217 758.4 791 54.7
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.8e-216 755.7 861 52.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.8e-216 755.7 861 52.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.1e-215 754.2 863 52.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.2e-214 750.7 858 51.9
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.8e-213 744.6 868 50.6
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-211 740.0 872 52.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.4e-210 736.5 868 52.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.5e-209 733.8 914 49.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.9e-207 726.9 855 53.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 5.5e-207 725.3 949 47.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.6e-204 716.5 856 49.2
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.3e-202 708.8 697 58.1
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.1e-199 701.0 889 47.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.6e-196 689.9 857 48.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.7e-195 687.2 828 48.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.1e-194 682.6 707 54.9
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 4.1e-194 682.6 840 47.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.7e-184 650.6 853 48.3
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 5.5e-183 645.6 626 58.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 8.0e-182 641.7 856 47.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.6e-159 565.8 565 55.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.1e-149 533.5 624 50.0
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.9e-146 524.2 631 49.6
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 3.2e-146 523.5 896 38.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.7e-131 474.6 895 37.7
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.4e-130 469.5 875 37.3
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 3.5e-129 466.8 458 55.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.3e-123 448.4 384 62.0
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.1e-122 442.6 798 38.3
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.0e-112 412.1 508 49.0
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.9e-105 386.0 399 56.6
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.2e-102 375.9 314 60.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.2e-100 372.1 677 34.9
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.2e-99 367.9 431 48.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.5e-92 343.6 466 46.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.0e-83 315.8 461 41.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-82 311.6 246 64.2
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.1e-73 281.6 336 47.3
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 4.0e-72 277.3 202 67.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-71 275.8 344 49.7
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 5.9e-68 263.5 238 61.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.8e-67 260.8 238 60.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 3.0e-64 251.1 835 28.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-59 236.1 229 53.3
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 8.6e-59 233.0 314 50.0
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 9.8e-55 219.5 179 63.7
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.5e-52 211.1 150 71.3
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.3e-50 204.5 283 48.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 8.3e-46 189.9 216 48.6
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.9e-38 164.1 149 57.7
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.0e-36 157.1 187 48.7
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 5.1e-35 154.1 216 47.2
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.1e-32 146.4 607 26.4
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 4.0e-32 144.4 170 48.8
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 5.2e-32 144.1 526 26.2
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 8.4e-30 136.7 156 50.6
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 3.2e-29 134.8 601 27.8
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.8e-28 130.2 172 44.2
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.0e-27 129.8 289 37.7
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.5e-26 125.9 291 36.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-26 125.6 298 36.6
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.8e-25 121.7 102 57.8
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-22 112.1 118 52.5
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.7e-20 105.1 75 61.3
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-19 102.1 157 42.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.9e-16 90.5 75 61.3
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.9e-16 90.5 209 41.6
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 4.5e-15 87.8 212 40.1
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-12 79.0 58 63.8
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.1e-12 79.0 54 64.8
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-10 73.2 86 50.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.5e-10 72.0 118 41.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.5e-10 72.0 212 34.0
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 6.9e-08 63.9 65 53.8
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.5e-07 62.8 68 51.5
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.6e-07 62.0 57 54.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.4e-07 61.6 57 49.1
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 3.4e-07 61.6 59 54.2
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.7e-06 59.3 49 59.2
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.8e-06 58.2 148 26.4
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.9e-06 57.8 57 57.9
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.9e-06 57.8 49 59.2


User provided reference genes

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