Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 3.7e-219 764.6 393 100.0
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 4.4e-212 741.1 401 96.0
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 2.3e-165 585.9 393 76.8
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 4.0e-165 585.1 398 77.4
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.4e-164 581.6 393 76.1
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 9.8e-164 580.5 393 77.6
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.7e-163 579.7 393 75.8
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.7e-163 579.7 338 85.8
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 3.7e-163 578.6 365 80.3
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 4.9e-163 578.2 399 75.4
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-162 576.6 393 75.6
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 2.4e-162 575.9 410 74.4
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.4e-162 574.7 393 75.6
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.7e-161 572.4 398 74.9
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 3.5e-161 572.0 394 74.9
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 6.0e-161 571.2 399 75.4
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 7.8e-161 570.9 395 75.7
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 7.8e-161 570.9 366 78.1
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 1.3e-160 570.1 400 73.5
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.3e-160 570.1 401 74.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.3e-160 570.1 398 75.1
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 2.3e-160 569.3 402 73.9
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 2.3e-160 569.3 402 73.9
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.3e-160 569.3 401 75.8
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 3.0e-160 568.9 398 73.6
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 3.0e-160 568.9 398 75.1
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 3.9e-160 568.5 401 74.3
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 2.5e-159 565.8 402 73.1
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 3.3e-159 565.5 407 74.0
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 3.3e-159 565.5 404 75.0
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 5.6e-159 564.7 405 72.3
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 9.5e-159 563.9 402 74.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 9.5e-159 563.9 386 74.6
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.2e-158 563.5 394 73.9
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 2.8e-158 562.4 357 78.2
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.1e-157 560.5 401 73.6
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-157 560.5 400 75.0
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.4e-157 560.1 400 73.5
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.4e-157 560.1 347 80.4
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.2e-156 557.0 399 73.9
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.2e-156 557.0 392 74.5
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.2e-156 557.0 350 79.1
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.0e-156 556.2 392 74.2
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.6e-156 555.8 400 74.5
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 3.4e-156 555.4 347 79.8
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 3.4e-156 555.4 395 72.9
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 3.4e-156 555.4 401 72.6
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 7.6e-156 554.3 391 72.6
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.7e-155 553.1 393 72.5
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.7e-155 553.1 387 74.2
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.9e-155 552.4 387 73.9
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 4.9e-155 551.6 372 75.0
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 8.4e-155 550.8 401 72.1
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 8.4e-155 550.8 407 70.3
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 5.4e-154 548.1 372 74.7
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 7.1e-154 547.7 400 71.0
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 9.2e-154 547.4 399 71.2
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.2e-153 547.0 370 76.5
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 2.7e-153 545.8 401 71.6
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 3.5e-153 545.4 392 72.2
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 4.6e-153 545.0 391 71.4
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 6.0e-153 544.7 401 70.6
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 7.8e-153 544.3 401 70.3
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.0e-152 543.9 355 75.2
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.3e-152 542.7 397 71.8
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 2.3e-152 542.7 401 70.1
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 3.0e-152 542.3 400 71.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 5.1e-152 541.6 355 76.9
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 6.6e-152 541.2 399 70.2
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 6.6e-152 541.2 398 70.6
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 7.3e-151 537.7 366 73.0
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 7.3e-151 537.7 391 70.1
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 2.1e-150 536.2 346 76.6
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 3.6e-150 535.4 408 68.9
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 4.7e-150 535.0 366 73.0
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 8.1e-150 534.3 386 70.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.1e-149 533.9 400 69.2
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.4e-149 532.7 402 67.9
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 4.0e-149 531.9 405 67.4
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 6.9e-149 531.2 406 69.0
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.2e-148 530.4 366 72.7
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.5e-148 530.0 366 72.1
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 2.0e-148 529.6 422 66.4
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 3.4e-148 528.9 347 75.2
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 4.4e-148 528.5 366 71.9
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.7e-147 526.6 363 72.7
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 2.9e-147 525.8 388 68.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.9e-146 523.1 393 69.0
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.7e-144 516.5 456 61.4
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.8e-142 508.4 406 67.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 6.2e-142 508.1 396 65.7
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.5e-140 503.4 367 72.2
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.5e-140 503.4 391 68.5
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.6e-137 493.4 401 66.1
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 3.5e-137 492.3 396 65.7
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 6.0e-137 491.5 306 79.4
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 1.0e-136 490.7 306 79.4
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 5.1e-136 488.4 346 69.9
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 4.3e-135 485.3 361 67.6
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 3.6e-134 482.3 403 67.2
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 1.3e-131 473.8 283 82.7
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 9.3e-122 441.0 365 62.2
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.1e-111 407.5 437 53.1
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 2.8e-110 402.9 360 56.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 8.3e-78 295.0 325 54.5
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 2.9e-75 286.6 278 58.3
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 4.7e-73 279.3 247 63.6
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 3.7e-70 269.6 191 68.1
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 9.2e-69 265.0 160 80.6
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.9e-67 260.0 203 62.1
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 4.3e-66 256.1 222 65.3
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 7.5e-63 245.4 183 67.2
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.5e-58 231.1 260 53.1
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 2.7e-52 210.3 323 44.3
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 3.6e-49 199.9 205 53.7
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.1e-44 184.1 168 64.3
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.5e-42 177.9 377 36.1
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 2.5e-42 177.2 110 79.1
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.6e-41 174.5 110 76.4
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.4e-40 171.4 144 63.2
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.8e-40 171.0 100 82.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 5.2e-40 169.5 110 75.5
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 4.1e-37 159.8 402 31.6
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.1e-33 147.5 287 33.1
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 2.0e-31 141.0 282 31.2
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.4e-29 132.9 161 49.7
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.1e-29 132.5 161 49.7
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 5.1e-27 126.3 145 58.6
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.9e-22 110.5 266 28.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 6.4e-22 109.4 78 73.1
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 2.3e-19 100.9 208 31.7
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 6.7e-19 99.4 65 76.9
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.7e-17 93.6 60 78.3
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 2.4e-16 90.9 130 40.0
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 5.3e-16 89.7 77 63.6
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.2e-15 88.6 80 62.5
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.2e-15 88.6 80 62.5
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.2e-15 88.6 51 86.3
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.5e-15 88.2 50 88.0
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 3.4e-15 87.0 194 32.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.6e-15 85.9 69 63.8
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.6e-15 85.9 49 75.5
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 9.9e-15 85.5 51 72.5
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.3e-14 85.1 62 61.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-13 81.6 53 77.4
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 1.9e-13 81.3 55 74.5
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.2e-13 80.1 52 76.9
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.1e-12 77.8 85 50.6
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.0e-12 76.3 52 75.0
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.8e-11 74.7 51 62.7
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.9e-11 73.6 48 77.1
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.9e-11 73.6 48 77.1
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 9.6e-10 68.9 40 87.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.6e-09 68.2 40 85.0
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 3.8e-06 57.0 75 45.3


User provided reference genes

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