Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.6e-54 216.5 165 100.0
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 3.1e-42 175.6 166 84.9
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.6e-19 99.0 144 45.1
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.3e-18 95.1 139 44.6
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.2e-17 94.0 140 57.9
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.0e-17 93.2 145 59.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.0e-17 93.2 146 50.7
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.5e-17 92.0 144 41.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 4.5e-17 92.0 137 42.3
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.5e-17 92.0 182 39.0
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 5.8e-17 91.7 135 43.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 7.6e-17 91.3 131 56.5
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 7.6e-17 91.3 145 51.7
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 9.9e-17 90.9 144 45.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 9.9e-17 90.9 142 50.0
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 9.9e-17 90.9 140 63.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.3e-16 90.5 145 46.9
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-16 90.5 139 41.7
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-16 90.5 139 44.6
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-16 90.5 139 44.6
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.3e-16 90.5 139 44.6
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.3e-16 90.5 139 45.3
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.3e-16 90.5 137 41.6
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-16 90.1 144 48.6
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-16 90.1 144 48.6
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-16 90.1 144 48.6
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-16 89.7 144 46.5
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 2.2e-16 89.7 145 46.9
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 3.8e-16 89.0 141 48.2
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.8e-16 89.0 145 51.0
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 6.4e-16 88.2 133 49.6
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 6.4e-16 88.2 138 50.0
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 8.4e-16 87.8 139 44.6
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.1e-15 87.4 140 41.4
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.1e-15 87.4 146 41.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.4e-15 87.0 136 41.2
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.9e-15 86.7 168 36.3
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-15 86.7 144 45.1
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.9e-15 86.7 139 66.9
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.4e-15 86.3 133 45.1
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 5.5e-15 85.1 142 47.2
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 5.5e-15 85.1 142 48.6
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 5.5e-15 85.1 69 60.9
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 7.1e-15 84.7 135 40.0
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 7.1e-15 84.7 146 49.3
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 7.1e-15 84.7 137 40.1
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 7.1e-15 84.7 132 53.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 9.3e-15 84.3 140 42.9
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 9.3e-15 84.3 149 55.0
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.2e-14 84.0 168 41.7
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.1e-14 83.2 142 43.7
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.1e-14 83.2 77 57.1
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 3.5e-14 82.4 138 40.6
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 3.5e-14 82.4 75 60.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.6e-14 82.0 79 57.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.6e-14 82.0 142 53.5
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 4.6e-14 82.0 71 57.7
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.0e-14 81.6 140 50.7
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.0e-14 81.6 144 40.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.0e-14 81.6 147 40.1
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 6.0e-14 81.6 147 40.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 7.9e-14 81.3 141 57.4
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 7.9e-14 81.3 149 36.9
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 7.9e-14 81.3 149 36.9
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.0e-13 80.9 140 41.4
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.0e-13 80.9 69 58.0
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-13 80.5 141 47.5
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.3e-13 80.5 140 38.6
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.8e-13 80.1 79 50.6
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.8e-13 80.1 80 57.5
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-13 80.1 138 39.9
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.8e-13 80.1 80 55.0
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.8e-13 80.1 142 48.6
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.3e-13 79.7 78 53.8
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.3e-13 79.7 134 41.8
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.0e-13 79.3 142 40.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.0e-13 79.3 144 50.0
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 3.9e-13 79.0 77 54.5
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 3.9e-13 79.0 161 42.2
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 3.9e-13 79.0 144 37.5
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 5.1e-13 78.6 85 49.4
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 5.1e-13 78.6 159 37.7
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.1e-13 78.6 147 38.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 6.7e-13 78.2 168 35.7
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 6.7e-13 78.2 80 52.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 6.7e-13 78.2 74 56.8
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 8.7e-13 77.8 139 39.6
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.1e-12 77.4 73 56.2
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.1e-12 77.4 140 35.0
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-12 77.4 136 55.9
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.5e-12 77.0 80 51.2
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.9e-12 76.6 70 55.7
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.9e-12 76.6 70 55.7
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.5e-12 76.3 104 43.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.5e-12 76.3 69 58.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.5e-12 76.3 80 50.0
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.5e-12 76.3 142 42.3
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.5e-12 76.3 142 40.1
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.3e-12 75.9 142 35.9
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.3e-12 75.9 147 46.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.3e-12 75.9 143 35.0
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.3e-12 75.5 128 47.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 5.6e-12 75.1 144 47.2
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.4e-12 74.7 76 48.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 7.4e-12 74.7 75 52.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.4e-12 74.7 162 36.4
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 7.4e-12 74.7 137 40.1
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.4e-12 74.7 138 36.2
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.4e-12 74.7 151 56.3
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 9.6e-12 74.3 76 59.2
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 9.6e-12 74.3 76 59.2
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 9.6e-12 74.3 75 54.7
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.3e-11 73.9 103 41.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-11 73.9 77 50.6
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-11 73.9 75 56.0
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.6e-11 73.6 79 54.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.1e-11 73.2 76 50.0
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.1e-11 73.2 79 54.4
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 2.8e-11 72.8 70 57.1
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 2.8e-11 72.8 77 50.6
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.7e-11 72.4 76 48.7
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.7e-11 72.4 73 52.1
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 3.7e-11 72.4 140 35.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 3.7e-11 72.4 140 35.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.2e-11 71.6 73 53.4
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.1e-11 71.2 132 62.1
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.1e-11 71.2 169 33.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.1e-11 71.2 76 50.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 8.1e-11 71.2 162 44.4
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 8.1e-11 71.2 129 53.5
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-10 70.9 132 37.9
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.4e-10 70.5 151 39.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.8e-10 70.1 68 55.9
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.4e-10 69.7 72 50.0
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.4e-10 69.7 85 49.4
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.1e-10 69.3 159 35.8
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.0e-10 68.9 84 48.8
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 5.3e-10 68.6 136 42.6
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 6.9e-10 68.2 129 38.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.9e-10 68.2 78 50.0
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 9.0e-10 67.8 70 57.1
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-09 67.4 80 46.2
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-09 67.4 80 46.2
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-09 67.4 80 46.2
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.2e-09 67.4 84 50.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.0e-09 66.6 82 50.0
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.6e-09 66.2 135 62.2
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.5e-09 65.5 75 50.7
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 5.8e-09 65.1 73 52.1
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 7.6e-09 64.7 73 50.7
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 1.7e-08 63.5 85 43.5
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.9e-08 62.8 149 56.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.9e-08 62.8 143 37.1
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 4.9e-08 62.0 70 52.9
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.9e-07 60.1 70 54.3
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 3.2e-07 59.3 65 49.2
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.2e-07 58.9 79 40.5
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.5e-07 58.5 66 51.5
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 5.5e-07 58.5 102 36.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.5e-07 58.5 69 50.7
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 5.5e-07 58.5 153 32.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 7.1e-07 58.2 67 52.2
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 9.3e-07 57.8 77 45.5
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.2e-06 57.4 77 44.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.6e-06 57.0 140 42.1
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 2.1e-06 56.6 109 44.0
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 6.0e-06 55.1 80 40.0
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 7.9e-06 54.7 72 43.1
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 7.9e-06 54.7 76 43.4


User provided reference genes

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