Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.0e-218 761.5 383 100.0
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.1e-207 726.5 383 94.5
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.1e-147 526.2 372 71.5
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 8.4e-144 514.2 365 72.9
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 2.7e-142 509.2 365 72.1
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.6e-139 500.0 383 68.9
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.8e-138 496.5 370 70.0
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 4.1e-138 495.4 362 69.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 4.5e-137 491.9 381 66.9
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.7e-136 490.0 372 67.5
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.7e-136 490.0 356 69.9
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.2e-136 489.6 305 78.7
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.9e-136 489.2 382 66.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 3.8e-136 488.8 371 67.9
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 3.8e-136 488.8 367 69.5
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.4e-135 486.9 379 67.3
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.2e-134 483.8 392 65.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 2.1e-134 483.0 374 66.6
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 7.9e-134 481.1 347 72.0
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.3e-133 479.6 352 69.0
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 5.1e-133 478.4 381 66.7
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.5e-132 476.1 328 72.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.3e-131 473.8 379 65.7
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.2e-131 473.0 330 71.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 2.2e-131 473.0 347 70.9
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 4.8e-131 471.9 384 65.1
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 8.2e-131 471.1 349 69.3
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.4e-130 470.3 353 68.0
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.4e-130 469.5 305 76.7
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 5.3e-130 468.4 379 65.2
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 6.9e-130 468.0 331 70.4
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.0e-129 466.5 387 64.1
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 2.6e-129 466.1 364 65.1
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 4.5e-129 465.3 361 66.2
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 4.5e-129 465.3 368 64.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 5.9e-129 464.9 389 62.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.2e-128 463.0 359 66.3
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 2.9e-128 462.6 372 64.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 6.5e-128 461.5 385 63.1
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.1e-127 460.7 367 63.8
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.1e-127 460.7 369 65.0
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.4e-127 460.3 366 65.0
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.9e-127 459.9 374 64.4
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.5e-127 459.5 305 73.4
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.2e-127 459.1 330 67.0
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 9.4e-127 457.6 292 76.7
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.2e-126 457.2 358 66.8
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.6e-126 456.8 304 73.0
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.6e-126 456.8 374 63.4
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-126 456.4 336 69.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.7e-126 455.3 305 73.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 6.1e-126 454.9 330 69.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.8e-125 453.4 358 65.6
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 3.0e-125 452.6 368 63.0
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 6.7e-125 451.4 355 65.4
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.8e-125 451.1 369 61.2
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-124 450.7 320 69.4
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.1e-124 450.7 326 66.9
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 2.6e-124 449.5 364 63.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 4.4e-124 448.7 372 63.7
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 5.7e-124 448.4 344 66.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.7e-123 446.8 341 67.4
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.7e-123 446.8 372 62.6
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 3.7e-123 445.7 330 68.5
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 6.3e-123 444.9 378 61.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 8.2e-123 444.5 304 72.4
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.6e-121 440.3 331 67.1
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.0e-121 439.9 378 61.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.5e-121 439.1 372 61.8
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.0e-120 437.6 377 63.4
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.3e-120 437.2 311 69.5
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.7e-120 436.8 361 63.2
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 2.9e-120 436.0 305 70.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.9e-120 436.0 302 70.5
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.8e-120 435.6 311 69.1
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 6.5e-120 434.9 307 70.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 8.5e-120 434.5 321 66.7
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-119 434.1 321 67.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.5e-119 433.0 373 61.9
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.2e-119 432.6 372 60.8
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.2e-119 432.6 370 60.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.2e-119 432.2 375 62.7
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-118 430.6 365 61.6
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.6e-118 430.3 381 60.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.7e-118 429.5 377 62.3
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 4.7e-118 428.7 312 67.9
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.0e-117 425.6 424 56.1
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 5.2e-117 425.2 335 63.6
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 3.2e-111 406.0 385 56.6
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 9.4e-111 404.4 377 59.2
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.8e-108 394.4 279 68.1
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.8e-108 394.4 279 68.1
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 5.9e-105 385.2 283 67.1
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 7.7e-105 384.8 253 73.1
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.2e-104 383.3 389 55.3
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 9.8e-100 367.9 294 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 4.9e-99 365.5 285 62.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 5.9e-97 358.6 310 57.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 5.7e-92 342.0 291 61.5
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-91 340.5 301 53.8
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.1e-90 337.8 269 64.3
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-90 337.0 300 54.0
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.6e-89 334.0 294 58.5
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 5.9e-89 332.0 295 53.2
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 5.9e-89 332.0 300 53.3
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-88 330.5 302 54.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.3e-88 330.1 284 61.3
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.3e-88 330.1 300 52.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.0e-88 328.9 302 52.3
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 8.6e-88 328.2 301 53.2
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-87 326.6 302 52.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 5.6e-87 325.5 301 52.8
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 9.5e-87 324.7 302 52.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-86 324.3 294 53.7
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.2e-86 324.3 304 53.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.6e-86 323.9 302 52.3
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.6e-86 322.8 296 52.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.0e-86 321.6 302 53.6
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.0e-85 321.2 302 54.0
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-84 315.5 302 52.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.8e-84 315.5 302 52.3
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.8e-84 315.5 303 50.5
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.8e-84 315.5 302 52.6
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.8e-84 315.5 300 52.3
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.8e-84 315.5 305 51.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.8e-84 314.7 299 51.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.7e-83 313.9 302 52.0
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.9e-83 313.2 307 50.8
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-83 312.4 311 51.1
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 4.9e-83 312.4 304 52.6
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 6.4e-83 312.0 308 51.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.9e-82 310.5 303 51.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-82 309.7 313 50.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 4.1e-82 309.3 276 53.6
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.1e-82 309.3 223 66.4
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-81 307.4 302 51.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 4.6e-81 305.8 308 48.1
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.6e-81 305.8 302 49.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.8e-81 305.1 301 50.8
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-78 297.7 311 49.2
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 4.7e-78 295.8 282 51.8
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.7e-75 287.3 229 65.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.2e-75 287.0 287 49.5
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 9.5e-71 271.6 308 47.4
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-70 269.6 362 41.4
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 6.2e-70 268.9 294 47.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-69 265.8 287 48.4
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-65 253.8 248 50.8
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.1e-61 240.0 288 47.2
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.7e-57 226.9 287 42.9
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-56 224.2 222 51.4
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 5.3e-53 212.6 194 53.1
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 5.3e-53 212.6 194 53.1
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.9e-50 204.1 191 56.5
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.1e-49 200.7 193 56.5
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 3.9e-48 196.4 321 36.4
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 7.4e-39 165.6 164 50.6
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-37 161.8 128 54.7
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 7.6e-36 155.6 128 53.1
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 7.6e-36 155.6 128 53.1
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.4e-35 152.1 309 32.4
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.1e-29 133.7 82 79.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 9.0e-29 132.1 158 47.5
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 9.0e-29 132.1 111 50.5
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.2e-22 110.9 94 62.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.5e-20 104.8 292 28.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.9e-13 79.3 57 68.4


User provided reference genes

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