Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 0.0e+00 2105.5 1111 100.0
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 0.0e+00 2016.5 1109 93.4
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.4e-308 1063.1 1150 53.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.2e-308 1062.0 1148 53.7
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.2e-307 1060.1 1168 52.2
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.1e-295 1020.4 1163 51.0
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.4e-287 993.4 1159 50.8
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 4.7e-280 968.4 1169 49.8
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 4.9e-277 958.4 1148 49.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 2.4e-276 956.1 1176 49.4
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 7.1e-276 954.5 1167 49.3
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 1.3e-272 943.7 1153 49.3
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.1e-272 941.0 1161 49.2
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.1e-271 939.1 1161 49.1
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.0e-271 938.7 1207 47.7
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.8e-270 934.9 1153 48.6
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 9.9e-270 934.1 1155 47.4
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 8.4e-269 931.0 1143 48.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 9.3e-268 927.5 1153 48.2
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.1e-267 926.4 1152 48.4
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.3e-266 923.7 1123 49.1
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.5e-265 920.2 1150 48.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.3e-264 917.1 1174 47.7
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 3.7e-264 915.6 1179 46.9
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 2.4e-263 912.9 1156 47.0
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 4.0e-263 912.1 1156 47.6
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 6.0e-259 898.3 1143 48.4
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 7.9e-259 897.9 1164 46.9
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.8e-258 896.7 1148 47.4
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.3e-258 896.3 1130 48.3
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.9e-257 893.3 1143 47.2
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 3.3e-257 892.5 1171 45.5
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 6.2e-256 888.3 1141 47.7
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 6.2e-256 888.3 1137 47.8
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 6.2e-256 888.3 1142 47.5
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 1.5e-254 883.6 1130 48.2
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 2.0e-254 883.2 1138 47.5
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.6e-254 882.9 1136 47.0
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 3.8e-253 879.0 1134 46.9
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.4e-252 877.1 1132 47.3
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.6e-251 873.6 1128 48.0
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.6e-251 872.1 1133 47.0
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.0e-250 869.4 1166 46.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 2.2e-248 863.2 1161 46.6
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 4.8e-248 862.1 1143 47.3
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.1e-247 860.9 1135 47.2
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 4.1e-247 859.0 1137 46.1
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 5.3e-247 858.6 1169 45.2
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 5.9e-246 855.1 1126 46.9
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 7.6e-246 854.7 1023 49.7
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.3e-245 854.0 1111 47.3
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1173 46.1
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 4.2e-244 849.0 1128 45.9
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 5.5e-244 848.6 1060 48.0
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.6e-243 847.0 1156 45.7
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.1e-243 846.7 1162 44.9
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.6e-243 845.5 1017 50.0
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 6.7e-242 841.6 1190 45.9
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 2.8e-240 836.3 1126 45.1
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 6.3e-240 835.1 1197 42.7
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 9.1e-239 831.2 1145 45.1
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 3.4e-238 829.3 1160 43.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.3e-237 827.4 1120 46.7
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 2.3e-234 816.6 1123 45.9
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-233 814.3 702 63.0
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.7e-233 812.0 1142 44.8
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 5.7e-233 812.0 974 48.5
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.8e-231 807.0 982 49.9
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.2e-230 804.3 1103 45.9
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.6e-230 803.1 959 49.9
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 4.5e-230 802.4 1127 44.4
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.7e-229 800.4 1159 43.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.0e-229 798.9 1145 44.4
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.4e-228 797.3 1170 43.1
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 1.9e-228 797.0 1135 45.2
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.2e-227 794.3 1141 44.3
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.7e-227 793.1 1144 44.2
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.8e-226 790.4 1145 44.5
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 3.0e-226 789.6 1166 45.0
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 5.2e-226 788.9 1114 44.3
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 8.8e-226 788.1 1142 43.5
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.5e-225 787.3 1138 44.3
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 2.2e-224 783.5 1140 42.8
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 2.2e-224 783.5 1140 42.8
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 3.7e-224 782.7 1145 43.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 4.8e-224 782.3 1131 43.7
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.3e-224 781.9 1132 43.2
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 8.2e-224 781.6 1127 42.9
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.1e-223 781.2 1129 43.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.4e-223 780.8 1142 42.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.4e-223 780.8 1145 43.4
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 7.0e-223 778.5 1135 43.2
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 7.0e-223 778.5 1135 43.6
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.2e-222 777.7 1179 43.8
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.6e-222 777.3 1140 43.4
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.6e-222 776.5 1134 43.4
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 4.5e-222 775.8 1134 43.4
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 8.5e-221 771.5 1141 43.0
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 3.2e-220 769.6 1147 42.5
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 3.6e-219 766.1 1167 42.7
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.3e-217 759.6 1131 42.7
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 4.4e-217 759.2 1135 42.0
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.1e-215 754.6 1166 42.3
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.6e-214 750.7 1055 44.1
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.3e-213 747.7 1179 42.4
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 6.8e-210 735.3 1146 41.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 8.8e-210 734.9 905 49.4
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-200 703.0 702 56.3
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 4.7e-187 659.4 642 57.2
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 8.9e-186 655.2 698 54.6
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.6e-185 653.7 698 54.4
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.5e-182 643.3 488 68.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 7.8e-182 642.1 818 48.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.9e-180 637.5 933 43.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 5.6e-180 636.0 1142 37.1
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 7.3e-180 635.6 879 45.7
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.5e-177 627.9 450 71.3
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.0e-177 627.5 647 54.9
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.2e-176 624.0 553 60.8
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.8e-170 604.4 931 41.6
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.4e-168 595.9 865 43.2
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 5.3e-162 576.2 911 41.2
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.9e-160 570.5 640 51.7
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 4.9e-160 569.7 917 41.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.1e-151 542.0 674 49.7
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 5.5e-143 513.1 971 37.5
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 3.6e-126 457.2 637 43.2
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-123 447.2 268 83.2
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-123 447.2 268 83.2
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.6e-121 441.0 664 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 6.1e-102 376.7 328 56.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.3e-99 369.0 739 36.5
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.2e-86 325.9 206 79.6
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.9e-80 304.3 620 36.8
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.0e-80 303.9 620 36.8
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.2e-76 292.7 466 42.5
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.8e-61 242.3 812 27.3
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.5e-60 239.2 221 55.7
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 8.9e-53 213.4 142 74.6
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.4e-50 204.1 672 28.7
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 2.0e-44 185.7 618 29.9
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 9.6e-39 166.8 168 57.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-37 163.3 130 63.1
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 1.8e-37 162.5 92 88.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.3e-32 145.6 91 75.8
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-31 143.3 171 44.4
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 9.6e-31 140.2 157 55.4
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 4.3e-23 114.8 381 28.9
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 5.1e-16 91.3 67 61.2
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.8e-14 85.5 126 38.1
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 2.7e-09 68.9 115 36.5
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 6.1e-09 67.8 111 35.1
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 3.9e-08 65.1 111 35.1
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 7.4e-07 60.8 231 26.0
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 7.4e-07 60.8 391 22.8


User provided reference genes

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