Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.0e-87 326.6 153 100.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.4e-73 279.6 153 91.5
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.6e-45 185.3 116 74.1
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 7.0e-41 171.0 109 72.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.2e-40 170.2 110 70.9
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 7.7e-40 167.5 97 74.2
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.0e-39 167.2 131 61.8
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.0e-39 167.2 99 75.8
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.3e-39 166.8 122 65.6
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.3e-39 166.0 127 66.9
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 3.8e-39 165.2 141 60.3
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.8e-39 165.2 153 56.9
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 3.8e-39 165.2 99 74.7
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 5.0e-39 164.9 95 74.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 5.0e-39 164.9 95 76.8
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 5.0e-39 164.9 124 65.3
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 6.6e-39 164.5 109 70.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 6.6e-39 164.5 124 64.5
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 6.6e-39 164.5 108 67.6
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 8.6e-39 164.1 149 57.7
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 8.6e-39 164.1 95 75.8
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 8.6e-39 164.1 96 75.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.5e-38 163.3 107 71.0
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.5e-38 163.3 95 74.7
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.5e-38 163.3 109 69.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.9e-38 162.9 97 75.3
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.9e-38 162.9 97 75.3
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.5e-38 162.5 119 64.7
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 3.3e-38 162.2 93 76.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 3.3e-38 162.2 100 71.0
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 4.3e-38 161.8 95 76.8
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 5.6e-38 161.4 94 74.5
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 5.6e-38 161.4 107 71.0
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.6e-38 161.4 142 56.3
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 9.5e-38 160.6 123 63.4
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.2e-37 160.2 96 72.9
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.2e-37 160.2 96 72.9
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.2e-37 160.2 94 74.5
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.2e-37 160.2 111 67.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.2e-37 160.2 135 57.8
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.6e-37 159.8 94 73.4
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.6e-37 159.8 102 69.6
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 1.6e-37 159.8 144 56.9
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.6e-37 159.8 136 61.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.8e-37 159.1 94 75.5
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 3.6e-37 158.7 79 83.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 4.7e-37 158.3 94 72.3
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 6.1e-37 157.9 138 58.7
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.1e-37 157.9 81 85.2
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 6.1e-37 157.9 150 54.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 8.0e-37 157.5 100 67.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.0e-36 157.1 113 65.5
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.0e-36 157.1 113 65.5
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.0e-36 157.1 117 62.4
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.0e-36 157.1 117 62.4
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.4e-36 156.8 153 52.3
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.3e-36 156.0 111 64.9
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.0e-36 155.6 113 64.6
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 5.2e-36 154.8 81 80.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.8e-36 154.5 145 55.2
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 6.8e-36 154.5 94 71.3
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 6.8e-36 154.5 109 63.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 8.9e-36 154.1 100 69.0
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 8.9e-36 154.1 107 67.3
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.2e-35 153.7 145 53.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 2.0e-35 152.9 94 69.1
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.0e-35 152.9 117 63.2
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 2.0e-35 152.9 147 55.1
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.0e-35 152.9 98 70.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 9.8e-35 150.6 84 76.2
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 4.9e-34 148.3 122 58.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 4.9e-34 148.3 103 66.0
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 4.1e-33 145.2 134 54.5
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.2e-32 143.7 81 76.5
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.0e-32 142.9 152 52.6
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 2.0e-32 142.9 91 67.0
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.7e-32 142.5 84 71.4
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.0e-31 140.6 139 49.6
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 5.0e-31 138.3 72 80.6
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 8.0e-29 131.0 99 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.8e-28 129.8 114 52.6
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 1.8e-28 129.8 82 65.9
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 8.9e-28 127.5 165 43.0
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 1.2e-27 127.1 166 42.8
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.2e-27 127.1 79 69.6
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 1.5e-27 126.7 192 40.1
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 2.8e-21 105.9 55 78.2
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 4.7e-21 105.1 51 88.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 1.1e-20 104.0 76 63.2
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 3.1e-20 102.4 51 82.4
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 4.0e-20 102.1 52 84.6
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.9e-14 83.2 94 47.9
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 2.0e-11 73.2 86 47.7
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 2.6e-11 72.8 91 40.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.1e-09 67.4 81 38.3
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 1.4e-09 67.0 61 57.4
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.9e-09 66.6 100 32.0
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 1.9e-09 66.6 34 73.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.2e-09 64.3 77 39.0
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 9.2e-09 64.3 78 39.7
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 1.2e-08 63.9 85 37.6
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.6e-08 63.5 78 37.2
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.6e-08 63.5 78 38.5
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 2.7e-08 62.8 78 37.2
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.7e-08 62.8 78 38.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 3.5e-08 62.4 78 37.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.5e-08 62.4 79 38.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.5e-08 62.4 77 40.3
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 3.5e-08 62.4 43 62.8
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 4.6e-08 62.0 78 35.9
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 7.8e-08 61.2 80 36.2
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 7.8e-08 61.2 77 39.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.0e-07 60.8 84 38.1
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.0e-07 60.8 77 37.7
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.0e-07 60.8 77 37.7
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.0e-07 60.8 78 37.2
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.3e-07 60.5 81 37.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 1.3e-07 60.5 78 35.9
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.7e-07 60.1 79 36.7
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.3e-07 59.7 77 37.7
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.3e-07 59.7 77 36.4
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.3e-07 59.7 88 37.5
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 3.0e-07 59.3 77 35.1
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 3.0e-07 59.3 77 36.4
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 3.0e-07 59.3 78 39.7
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 3.0e-07 59.3 77 36.4
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 3.9e-07 58.9 78 38.5
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 3.9e-07 58.9 82 35.4
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 3.9e-07 58.9 84 34.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.9e-07 58.9 77 36.4
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.9e-07 58.9 77 35.1
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 5.1e-07 58.5 77 36.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 5.1e-07 58.5 77 36.4
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 6.6e-07 58.2 81 33.3
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 6.6e-07 58.2 85 34.1
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 8.6e-07 57.8 78 33.3
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 8.6e-07 57.8 77 36.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 8.6e-07 57.8 83 36.1
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 8.6e-07 57.8 77 35.1
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.1e-06 57.4 77 35.1
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.1e-06 57.4 90 32.2
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.5e-06 57.0 82 34.1
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.5e-06 57.0 77 37.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.5e-06 57.0 77 35.1
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.5e-06 57.0 86 32.6
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.9e-06 56.6 84 35.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.9e-06 56.6 77 36.4
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.9e-06 56.6 81 34.6
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.9e-06 56.6 77 35.1
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.9e-06 56.6 77 37.7
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.9e-06 56.6 77 36.4
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.5e-06 56.2 77 36.4
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.5e-06 56.2 77 36.4
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.5e-06 56.2 81 33.3
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.5e-06 56.2 77 35.1
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 2.5e-06 56.2 84 32.1
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.5e-06 56.2 95 31.6
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.5e-06 56.2 95 31.6
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.3e-06 55.8 77 35.1
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 7.3e-06 54.7 77 35.1
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.3e-06 54.7 95 30.5
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 9.6e-06 54.3 77 35.1
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 9.6e-06 54.3 79 35.4
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 9.6e-06 54.3 77 33.8


User provided reference genes

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