Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 3.1e-190 668.3 338 100.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 5.5e-163 577.8 303 97.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.4e-150 536.6 318 81.8
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 4.1e-150 535.0 316 82.3
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.7e-148 529.6 328 79.6
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 6.5e-148 527.7 317 80.1
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 8.5e-148 527.3 328 78.7
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.1e-147 526.9 328 77.4
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.6e-146 523.1 317 79.8
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.7e-146 522.3 317 79.8
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 4.7e-146 521.5 344 75.9
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 1.2e-144 516.9 317 78.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.7e-144 514.6 344 74.4
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.7e-143 513.1 319 79.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 8.2e-143 510.8 309 82.2
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.1e-142 510.4 351 73.2
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.1e-142 510.4 323 77.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 3.1e-142 508.8 331 75.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 7.0e-142 507.7 334 76.3
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 7.0e-142 507.7 344 75.0
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 3.5e-141 505.4 321 76.3
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 4.5e-141 505.0 318 77.0
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 5.9e-141 504.6 370 70.0
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 7.7e-141 504.2 313 78.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 7.7e-141 504.2 319 77.4
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 7.7e-141 504.2 331 76.1
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.0e-140 503.8 306 80.4
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.0e-140 503.8 324 76.9
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.0e-140 503.8 355 72.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.0e-140 503.8 347 72.0
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.3e-140 503.4 314 77.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 2.2e-140 502.7 323 76.2
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.5e-140 501.1 318 77.7
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 8.5e-140 500.7 350 72.0
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.1e-139 500.4 336 75.6
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.5e-139 500.0 321 75.7
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.9e-139 499.6 332 75.0
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.9e-139 499.6 319 77.7
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 2.5e-139 499.2 325 78.2
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 2.5e-139 499.2 321 75.7
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.2e-139 498.8 314 80.6
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 3.2e-139 498.8 290 82.4
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.2e-139 498.4 319 75.2
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 4.2e-139 498.4 313 77.6
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.5e-139 498.0 323 75.2
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 2.7e-138 495.7 322 75.8
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.7e-138 495.0 315 77.8
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 4.0e-137 491.9 328 75.6
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.2e-136 490.3 352 71.3
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 2.0e-136 489.6 339 73.2
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.7e-135 486.5 361 68.7
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 2.2e-135 486.1 333 73.9
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 3.7e-135 485.3 287 80.1
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.4e-134 483.4 350 69.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 3.1e-134 482.3 322 72.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.0e-133 479.6 325 74.2
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.0e-133 479.6 307 76.2
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 2.0e-133 479.6 331 71.9
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 2.7e-133 479.2 306 76.8
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 5.9e-133 478.0 317 74.8
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.0e-132 477.2 322 74.2
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.0e-132 477.2 334 73.4
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.7e-132 476.5 306 75.8
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 5.0e-132 474.9 322 73.9
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.5e-131 473.4 327 72.8
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 2.5e-131 472.6 306 74.5
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.5e-131 472.6 323 72.1
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 3.2e-131 472.2 306 74.8
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 4.2e-131 471.9 365 68.5
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 4.2e-131 471.9 365 68.5
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.2e-131 471.1 330 70.3
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.2e-130 470.3 328 71.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 5.2e-129 464.9 344 70.3
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.2e-128 463.8 309 73.1
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 2.0e-128 463.0 320 72.2
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 3.4e-128 462.2 311 72.7
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.2e-127 459.5 311 71.4
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.5e-125 451.8 370 64.1
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.5e-125 451.8 317 69.4
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 5.9e-125 451.4 316 72.2
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 8.6e-124 447.6 354 67.5
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.3e-119 433.7 330 68.2
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 4.9e-119 431.8 286 74.8
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 6.4e-119 431.4 333 66.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.4e-118 429.5 296 75.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.1e-114 416.4 274 74.1
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 8.0e-114 414.5 305 67.5
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 8.0e-114 414.5 300 68.0
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.1e-113 412.5 286 70.3
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 9.2e-110 401.0 286 69.9
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 7.3e-107 391.3 236 80.9
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 8.3e-103 377.9 269 70.6
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 3.2e-102 375.9 297 60.9
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 6.0e-101 371.7 266 72.2
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 6.6e-100 368.2 268 69.8
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 6.2e-98 361.7 336 55.1
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 3.5e-93 345.9 231 74.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 3.3e-91 339.3 205 81.0
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 7.3e-91 338.2 285 64.2
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.8e-90 336.3 200 81.0
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.4e-89 334.0 245 66.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.2e-88 330.9 274 63.1
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.6e-88 329.7 337 55.2
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 7.8e-85 318.2 312 56.4
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.0e-84 317.8 323 54.8
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.3e-84 317.4 200 78.5
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.8e-81 307.0 340 49.7
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 9.9e-80 301.2 196 77.0
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.1e-75 287.7 216 65.3
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.0e-64 250.4 148 81.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 5.1e-60 235.7 285 46.0
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 2.1e-58 230.3 169 69.2
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 9.0e-57 224.9 131 82.4
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 2.6e-56 223.4 246 52.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.5e-51 207.6 120 81.7
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.3e-50 202.2 119 83.2
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 5.0e-47 192.6 351 35.6
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.9e-46 190.7 198 55.1
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 7.2e-46 188.7 138 65.9
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.1e-45 187.2 120 73.3
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 1.4e-44 184.5 129 72.1
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 1.4e-44 184.5 129 72.1
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 3.9e-44 183.0 138 65.9
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 1.4e-41 174.5 125 69.6
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.1e-41 172.9 162 61.1
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 3.9e-36 156.4 143 61.5
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 9.1e-33 145.2 87 79.3
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 3.5e-24 116.7 116 56.0
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.2e-21 108.2 82 63.4
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.6e-19 100.5 65 72.3
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 5.9e-16 89.4 155 38.7
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 7.7e-16 89.0 68 63.2
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.2e-13 81.6 110 42.7
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 2.1e-13 80.9 57 68.4
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 2.8e-13 80.5 81 51.9
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 8.0e-13 79.0 55 69.1
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 7.5e-11 72.4 59 59.3
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 7.5e-11 72.4 57 63.2
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 1.7e-10 71.2 59 59.3
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 4.5e-08 63.2 140 33.6
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 1.0e-07 62.0 36 72.2
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 2.3e-07 60.8 60 50.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 5.6e-06 56.2 36 75.0


User provided reference genes

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