Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-137 491.9 241 100.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.9e-133 479.2 241 96.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 5.7e-106 387.9 251 76.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 9.8e-106 387.1 247 75.7
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.8e-104 382.9 249 75.5
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.8e-104 382.9 249 73.9
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.8e-104 382.9 252 73.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.8e-104 382.9 250 74.8
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.8e-104 382.9 251 77.3
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.4e-104 382.5 248 75.0
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 3.2e-104 382.1 250 76.0
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.1e-104 381.7 252 73.4
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 5.4e-104 381.3 251 74.1
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 9.2e-104 380.6 252 72.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.2e-103 380.2 249 76.3
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.2e-103 380.2 251 76.1
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.6e-103 379.8 251 74.1
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.7e-103 379.0 251 74.5
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.9e-103 377.9 252 73.8
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.3e-102 376.7 250 74.4
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.7e-102 376.3 251 74.5
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.3e-102 375.9 251 72.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.3e-102 375.9 252 72.2
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.3e-102 375.9 249 72.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 6.6e-102 374.4 250 75.2
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.1e-101 373.6 246 73.2
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.5e-101 373.2 251 72.9
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.5e-101 373.2 251 72.9
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.9e-101 372.9 250 74.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.3e-101 372.1 250 74.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.3e-101 371.7 251 73.3
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 5.6e-101 371.3 251 73.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 7.3e-101 370.9 246 72.4
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 7.3e-101 370.9 246 72.4
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.3e-101 370.9 251 72.5
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 9.5e-101 370.5 246 72.4
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-100 370.2 246 72.4
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-100 370.2 246 72.4
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.2e-100 370.2 252 71.8
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.2e-100 370.2 252 71.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.6e-100 369.8 246 72.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.1e-100 369.4 250 72.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.8e-100 369.0 251 72.9
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.6e-100 368.6 249 74.3
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 6.2e-100 367.9 251 72.1
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 6.2e-100 367.9 252 71.0
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 8.0e-100 367.5 246 72.4
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 8.0e-100 367.5 250 70.4
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 8.0e-100 367.5 249 74.3
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 8.0e-100 367.5 249 71.1
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.0e-99 367.1 250 70.4
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 70.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.4e-99 366.7 249 74.3
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.4e-99 366.7 249 74.3
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 73.6
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.8e-99 366.3 250 73.6
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.3e-99 365.9 250 72.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.1e-99 365.5 249 73.1
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 3.1e-99 365.5 252 70.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.0e-99 365.2 249 73.9
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 4.0e-99 365.2 252 73.8
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 6.8e-99 364.4 246 71.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 6.8e-99 364.4 251 70.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.9e-99 364.0 250 72.8
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.9e-99 364.0 250 72.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.5e-98 363.2 250 72.8
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.5e-98 363.2 246 69.5
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.5e-98 363.2 250 70.0
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.0e-98 362.8 251 69.3
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 2.0e-98 362.8 250 74.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.6e-98 362.5 246 70.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.4e-98 362.1 239 71.5
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.4e-98 362.1 250 69.2
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 3.4e-98 362.1 252 71.4
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.4e-98 361.7 250 72.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.8e-98 361.3 246 70.3
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 5.8e-98 361.3 251 69.7
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 7.5e-98 360.9 249 71.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.3e-97 360.1 252 69.8
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.7e-97 359.8 261 68.2
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.7e-97 359.8 251 70.5
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.2e-97 359.4 252 70.2
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.9e-97 359.0 251 70.1
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 4.9e-97 358.2 252 70.6
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.3e-97 357.5 251 68.5
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.4e-96 356.7 251 69.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.4e-96 355.9 253 69.2
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.2e-96 355.5 247 70.9
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.1e-96 355.1 252 69.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.0e-95 352.8 251 68.5
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.0e-95 352.8 253 68.4
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.7e-95 352.4 250 68.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.5e-95 352.1 251 69.3
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.7e-94 349.7 253 67.2
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 8.6e-94 347.4 243 70.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 5.6e-93 344.7 251 68.5
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.6e-92 343.2 272 62.9
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.6e-92 343.2 272 62.9
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.8e-92 342.4 251 67.7
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 3.6e-92 342.0 251 65.7
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 4.7e-92 341.7 295 62.0
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-91 340.5 242 68.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.1e-91 340.5 242 68.2
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.1e-91 339.0 251 67.7
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 4.0e-91 338.6 242 67.4
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 4.0e-91 338.6 250 66.4
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.2e-91 338.2 241 71.8
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.2e-90 337.0 253 67.6
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.6e-90 335.9 240 70.0
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.4e-90 335.1 238 68.1
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.8e-90 334.7 238 68.1
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-89 333.6 225 74.2
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.7e-89 332.0 249 64.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.9e-89 331.6 254 62.6
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 4.9e-89 331.6 240 67.9
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.1e-88 330.5 288 59.7
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.6e-87 326.6 257 63.0
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.9e-86 322.0 254 64.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.1e-86 321.6 240 64.6
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 4.3e-85 318.5 185 83.2
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.1e-83 312.4 248 61.7
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 8.9e-83 310.8 251 62.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 8.9e-83 310.8 257 60.3
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.4e-82 308.9 202 72.8
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 6.4e-81 304.7 251 61.4
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 5.4e-80 301.6 174 83.9
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.7e-78 296.6 245 63.3
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-75 286.6 251 61.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.0e-75 285.4 175 77.1
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.2e-74 283.9 246 60.6
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.8e-71 271.2 153 85.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 4.4e-66 255.4 225 53.8
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 6.4e-65 251.5 186 67.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 6.4e-65 251.5 151 80.1
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-64 250.8 147 81.6
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.1e-63 246.5 182 68.7
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.8e-59 233.4 182 59.3
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.6e-52 210.3 175 59.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.6e-47 193.7 190 53.7
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.7e-47 193.0 190 55.3
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.7e-47 193.0 190 55.3
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.5e-45 187.2 110 82.7
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.5e-42 177.2 161 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.6e-39 166.0 156 52.6
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.1e-35 152.5 88 83.0
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.7e-29 132.1 106 64.2
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.4e-27 127.5 75 82.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.4e-24 117.5 174 37.4
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.9e-24 117.1 63 84.1
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 6.1e-23 112.1 84 69.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 3.0e-22 109.8 99 58.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 3.0e-22 109.8 99 58.6
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.6e-21 106.7 168 35.7
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.7e-20 102.8 108 56.5
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 4.0e-14 82.8 83 59.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 4.4e-13 79.3 94 53.2
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-11 74.3 52 67.3
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-09 67.4 54 66.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 5.0e-09 65.9 174 28.7
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 5.5e-08 62.4 47 61.7
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 9.4e-08 61.6 52 61.5
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 9.4e-08 61.6 46 54.3
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 3.6e-07 59.7 165 28.5
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 8.8e-06 55.1 34 70.6


User provided reference genes

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