Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 1.0e-199 699.9 362 100.0
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 5.3e-188 661.0 360 94.2
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 1.5e-81 307.4 365 52.6
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 1.4e-79 300.8 369 49.6
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 2.3e-74 283.5 361 48.2
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 1.6e-72 277.3 355 48.2
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 2.2e-69 266.9 360 46.1
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 2.9e-69 266.5 361 46.3
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 3.8e-69 266.2 370 44.6
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 1.1e-68 264.6 357 45.4
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 3.2e-68 263.1 358 44.4
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 1.2e-67 261.2 354 45.5
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 1.8e-66 257.3 358 44.7
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 3.0e-66 256.5 359 44.8
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 5.1e-66 255.8 353 43.6
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 4.3e-65 252.7 365 45.2
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 5.7e-65 252.3 357 46.5
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 5.7e-65 252.3 360 43.6
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 4.8e-64 249.2 360 43.9
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 1.4e-63 247.7 360 43.9
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 3.1e-63 246.5 333 48.0
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 3.1e-63 246.5 354 45.2
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 6.9e-63 245.4 343 44.3
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 2.6e-62 243.4 360 43.6
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 7.6e-62 241.9 356 43.8
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 1.3e-61 241.1 346 43.6
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 3.8e-61 239.6 311 48.9
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 6.5e-61 238.8 351 43.3
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 1.1e-60 238.0 352 42.6
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 2.5e-60 236.9 351 42.7
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 4.2e-60 236.1 355 43.4
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 7.2e-60 235.3 368 42.9
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 1.2e-59 234.6 314 44.6
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 4.6e-59 232.6 366 41.5
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 6.1e-59 232.3 309 46.3
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 6.1e-59 232.3 351 41.9
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 7.9e-59 231.9 362 41.4
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 5.1e-58 229.2 349 43.0
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 5.1e-58 229.2 352 42.3
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 2.5e-57 226.9 371 42.0
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 1.7e-56 224.2 348 40.5
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 1.4e-55 221.1 345 42.9
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.4e-55 221.1 366 42.6
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 1.8e-55 220.7 359 40.1
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 2.4e-55 220.3 366 42.3
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 3.1e-55 219.9 327 42.5
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 4.1e-55 219.5 349 39.8
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 1.5e-54 217.6 342 39.8
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 2.0e-54 217.2 356 41.3
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 2.0e-54 217.2 342 41.8
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 4.5e-54 216.1 362 39.8
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 1.0e-53 214.9 339 38.9
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.7e-53 214.2 353 41.6
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 2.9e-53 213.4 358 41.3
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 5.0e-53 212.6 343 42.0
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 1.4e-52 211.1 359 38.2
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 1.9e-52 210.7 324 43.5
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 1.9e-52 210.7 358 39.1
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 2.5e-52 210.3 350 40.9
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 2.5e-52 210.3 350 40.9
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 3.2e-52 209.9 345 41.4
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 5.5e-52 209.1 307 41.7
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.2e-51 208.0 344 40.4
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 1.2e-51 208.0 307 45.0
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.6e-51 207.6 345 40.0
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 2.1e-51 207.2 350 38.0
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 2.1e-51 207.2 363 38.6
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 2.1e-51 207.2 362 40.1
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 2.1e-51 207.2 292 46.9
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 1.0e-50 204.9 344 40.1
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.4e-50 204.5 346 40.5
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 2.3e-50 203.8 325 40.3
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 5.1e-50 202.6 344 39.8
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 6.7e-50 202.2 344 39.8
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 6.7e-50 202.2 355 40.3
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 3.3e-49 199.9 357 40.6
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 3.3e-49 199.9 345 40.3
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 5.7e-49 199.1 345 40.3
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 1.3e-48 198.0 362 37.8
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 6.3e-48 195.7 309 38.8
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 8.2e-48 195.3 376 36.2
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 1.5e-46 191.0 315 41.0
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 2.9e-45 186.8 259 46.7
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 5.0e-45 186.0 355 35.5
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 4.2e-44 183.0 365 36.4
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.2e-35 154.8 358 37.2
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.4e-31 141.4 356 37.4
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 9.1e-31 138.7 149 53.0
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.9e-29 133.7 250 37.6
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 4.2e-28 129.8 243 36.2
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 4.2e-28 129.8 243 36.2
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 3.0e-26 123.6 372 29.0
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 3.0e-26 123.6 327 28.7
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 1.1e-20 105.1 139 44.6
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 2.8e-19 100.5 229 33.2
Duzib168G1669 Durio zibethinus HOM05D007205 ORTHO05D009175 3.1e-15 87.0 128 44.5
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 1.7e-13 81.3 297 25.3
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 5.0e-13 79.7 307 27.0
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 1.5e-12 78.2 149 43.0
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 9.5e-12 75.5 180 33.9
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 9.5e-12 75.5 148 39.9
BcaB01g06014 Brassica carinata HOM05D007205 ORTHO05D009175 2.1e-11 74.3 249 30.9
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 8.0e-11 72.4 336 25.9
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 8.9e-10 68.9 270 29.3
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 1.5e-09 68.2 293 26.6
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.0e-09 67.8 336 25.3
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 3.4e-09 67.0 331 26.0
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 4.4e-09 66.6 355 24.2
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 4.4e-09 66.6 346 24.3
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 5.8e-09 66.2 333 24.9
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 5.8e-09 66.2 334 23.1
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 7.5e-09 65.9 351 25.9
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.3e-08 65.1 307 24.4
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 1.3e-08 65.1 345 26.4
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 1.3e-08 65.1 364 26.9
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.7e-08 64.7 300 25.0
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 3.7e-08 63.5 355 25.9
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 3.7e-08 63.5 357 24.1
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 4.9e-08 63.2 280 25.7
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 4.9e-08 63.2 345 23.8
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 4.9e-08 63.2 339 24.2
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 6.4e-08 62.8 328 24.7
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 6.4e-08 62.8 314 29.0
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 6.4e-08 62.8 333 26.1
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 6.4e-08 62.8 333 26.1
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 6.4e-08 62.8 334 26.0
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.1e-07 62.0 346 25.4
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.4e-07 61.6 312 26.0
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.4e-07 61.6 305 24.6
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.4e-07 61.6 354 25.7
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.2e-07 60.5 303 23.4
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 3.2e-07 60.5 340 23.8
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 4.1e-07 60.1 342 25.1
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 4.1e-07 60.1 325 27.1
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 4.1e-07 60.1 349 26.4
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 5.4e-07 59.7 356 25.6
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 9.2e-07 58.9 307 26.4
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 9.2e-07 58.9 351 25.1
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 9.2e-07 58.9 350 26.3
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 9.2e-07 58.9 339 25.7
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.2e-06 58.5 333 24.0
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 1.2e-06 58.5 344 24.7
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.2e-06 58.5 349 26.1
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.2e-06 58.5 300 25.0
Aqoxy4G00561 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.6e-06 58.2 127 30.7
Aqoxy4G00571 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.6e-06 58.2 127 30.7
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.6e-06 58.2 352 26.1
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 1.6e-06 58.2 359 23.7
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 1.6e-06 58.2 306 24.5
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 2.7e-06 57.4 319 25.4
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 3.5e-06 57.0 289 24.9
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 3.5e-06 57.0 325 25.2
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 3.5e-06 57.0 304 24.3
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 3.5e-06 57.0 304 24.3
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 4.6e-06 56.6 285 23.5
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 4.6e-06 56.6 358 26.0
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 7.8e-06 55.8 304 24.0


User provided reference genes

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