Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 5.7e-118 427.6 210 100.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 8.2e-117 423.7 210 99.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.8e-96 355.5 210 82.4
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 2.3e-95 352.4 210 82.4
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.5e-94 349.7 209 79.9
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 3.7e-93 345.1 212 81.6
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 4.9e-93 344.7 207 79.2
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 8.3e-93 344.0 210 79.5
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 2.4e-92 342.4 210 78.6
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.4e-92 342.4 205 80.5
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.2e-92 342.0 210 79.5
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 4.1e-92 341.7 210 79.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 9.2e-92 340.5 210 77.6
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.2e-91 340.1 207 77.8
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 2.0e-91 339.3 210 79.5
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 3.5e-91 338.6 210 79.5
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.0e-90 337.0 210 77.6
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.0e-90 337.0 210 77.6
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 1.3e-90 336.7 210 78.6
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.7e-90 336.3 210 79.5
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.3e-90 335.9 210 78.1
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.3e-90 335.9 210 77.1
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.9e-90 335.5 207 77.8
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 2.9e-90 335.5 210 77.1
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.9e-90 335.1 210 77.6
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 5.0e-90 334.7 208 78.4
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 3.3e-89 332.0 210 75.7
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 9.5e-89 330.5 210 78.1
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.6e-88 329.7 210 76.7
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 1.6e-88 329.7 208 75.5
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.1e-88 329.3 210 76.2
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 2.8e-88 328.9 207 75.8
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 2.8e-88 328.9 207 74.9
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 2.8e-88 328.9 207 74.9
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 4.7e-88 328.2 207 75.8
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 6.1e-88 327.8 210 76.7
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 6.1e-88 327.8 210 75.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 8.0e-88 327.4 207 75.8
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 8.0e-88 327.4 205 76.1
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 8.0e-88 327.4 210 76.2
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 8.0e-88 327.4 210 76.7
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.0e-87 327.0 210 77.1
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.4e-87 326.6 208 75.5
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.4e-87 326.6 207 76.3
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 3.1e-87 325.5 207 75.8
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 4.0e-87 325.1 205 77.6
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 5.2e-87 324.7 210 75.2
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 6.8e-87 324.3 210 75.7
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 6.8e-87 324.3 210 76.2
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 8.9e-87 323.9 208 74.5
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.2e-86 323.6 208 76.4
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.2e-86 323.6 210 74.8
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.0e-86 322.8 207 74.9
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 2.0e-86 322.8 202 78.2
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.0e-86 322.8 212 76.4
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.4e-86 322.0 222 73.9
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.4e-86 322.0 210 75.2
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 5.8e-86 321.2 207 76.3
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 5.8e-86 321.2 204 76.5
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 7.5e-86 320.9 211 77.7
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 9.8e-86 320.5 202 76.2
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 9.8e-86 320.5 202 76.2
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.3e-85 320.1 205 77.1
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.7e-85 319.7 205 75.1
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 2.2e-85 319.3 210 75.7
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 2.9e-85 318.9 208 74.5
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 3.7e-85 318.5 205 75.1
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 6.4e-85 317.8 203 78.3
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 8.3e-85 317.4 202 77.7
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.1e-84 317.0 209 73.2
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.1e-84 317.0 207 74.9
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.4e-84 316.6 202 77.2
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 3.2e-84 315.5 206 75.2
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.0e-84 314.3 202 76.2
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 9.2e-84 313.9 205 75.6
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.2e-83 313.5 205 76.1
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.7e-83 312.4 205 75.1
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 4.6e-83 311.6 203 76.4
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 6.0e-83 311.2 207 74.9
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 6.0e-83 311.2 206 74.3
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.8e-83 310.8 205 75.1
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.3e-82 310.1 206 73.3
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.3e-82 309.3 203 75.9
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 2.3e-82 309.3 197 75.6
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.3e-82 309.3 205 75.1
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.0e-82 308.9 210 72.9
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 3.9e-82 308.5 203 74.9
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.9e-82 308.5 205 73.7
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.9e-82 308.5 210 72.9
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 3.9e-82 308.5 206 72.8
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 8.6e-82 307.4 203 75.4
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.5e-81 306.6 203 74.9
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.5e-81 305.8 205 73.7
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 5.6e-81 304.7 233 66.5
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 8.0e-80 300.8 205 72.7
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.0e-79 298.5 205 72.2
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 3.4e-78 295.4 206 70.9
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 3.4e-78 295.4 206 70.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.0e-74 283.9 183 73.8
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 1.1e-73 280.4 176 77.3
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 1.5e-70 270.0 208 66.8
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 4.9e-69 265.0 206 64.1
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 4.1e-68 261.9 202 64.9
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 3.5e-67 258.8 203 65.0
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.0e-66 257.3 168 75.6
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 5.1e-66 255.0 167 74.9
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.1e-64 247.7 210 62.4
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 8.1e-64 247.7 210 62.4
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.0e-63 245.4 204 56.4
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 5.2e-63 245.0 201 57.7
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.8e-61 238.8 155 77.4
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 9.3e-60 234.2 207 56.5
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 8.7e-58 227.6 207 54.1
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.5e-57 226.9 164 67.1
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.3e-57 225.3 200 58.5
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.6e-56 223.4 136 80.1
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 7.6e-54 214.5 150 73.3
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 2.0e-46 189.9 124 67.7
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 2.2e-45 186.4 121 75.2
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 2.2e-45 186.4 121 74.4
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.4e-44 183.0 151 64.2
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.2e-44 182.6 151 64.2
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.9e-43 177.9 173 57.8
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 7.4e-41 171.4 97 79.4
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.3e-34 150.6 100 74.0
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.8e-34 150.2 162 48.1
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.5e-30 137.1 200 41.5
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 9.7e-25 117.9 206 38.8
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.1e-23 114.4 75 70.7
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 1.4e-23 114.0 75 68.0
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.7e-21 107.1 105 56.2
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 8.5e-21 104.8 60 78.3
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 5.5e-20 102.1 75 66.7
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 1.2e-11 74.3 37 89.2
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 6.3e-08 62.0 37 81.1
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 1.4e-07 60.8 41 65.9
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 4.1e-07 59.3 36 75.0
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 5.3e-07 58.9 40 75.0


User provided reference genes

Program Settings