Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 2.6e-190 669.1 487 100.0
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 2.5e-185 652.5 487 97.5
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.9e-116 423.7 480 70.8
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 2.2e-112 410.2 458 70.7
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 6.6e-109 398.7 462 74.2
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 2.1e-107 393.7 455 64.4
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 1.4e-106 391.0 453 74.8
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 4.0e-106 389.4 462 69.0
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 6.8e-106 388.7 453 72.0
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 2.0e-105 387.1 468 69.0
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 2.6e-105 386.7 472 64.6
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 3.4e-105 386.3 461 73.3
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 2.9e-104 383.3 489 66.9
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 7.0e-103 378.6 438 70.1
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 1.2e-102 377.9 458 69.2
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 3.5e-102 376.3 453 70.0
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 3.0e-101 373.2 447 74.0
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 1.2e-99 367.9 474 66.2
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 1.6e-99 367.5 464 67.2
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 3.6e-99 366.3 474 62.7
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 8.1e-99 365.2 450 72.9
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 1.1e-98 364.8 428 71.0
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 1.1e-98 364.8 467 65.5
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 1.1e-98 364.8 453 72.0
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 1.8e-98 364.0 478 66.7
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 3.1e-98 363.2 455 67.5
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 5.2e-98 362.5 478 66.7
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 1.2e-97 361.3 468 66.5
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 2.6e-97 360.1 460 67.6
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 4.4e-97 359.4 434 70.0
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 5.8e-97 359.0 479 65.8
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 9.9e-97 358.2 481 65.9
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 1.7e-96 357.5 454 70.7
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 3.7e-96 356.3 446 71.1
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 1.4e-95 354.4 478 67.6
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 2.4e-95 353.6 456 53.5
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 5.4e-95 352.4 447 68.2
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 7.1e-95 352.1 481 65.1
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 9.2e-95 351.7 456 67.1
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 3.5e-94 349.7 486 68.5
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 3.0e-93 346.7 453 69.8
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 3.9e-93 346.3 425 67.5
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 1.1e-92 344.7 440 73.0
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 1.1e-92 344.7 428 68.2
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 1.9e-92 344.0 452 63.9
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 2.5e-92 343.6 463 68.0
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 7.3e-92 342.0 521 60.8
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 8.1e-91 338.6 451 70.3
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 2.3e-90 337.0 487 65.3
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 2.3e-90 337.0 470 66.2
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 2.3e-90 337.0 470 66.2
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 4.0e-90 336.3 449 69.5
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 6.8e-90 335.5 461 67.7
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 6.8e-90 335.5 456 62.9
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 6.8e-90 335.5 429 68.8
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 1.5e-89 334.3 440 67.7
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 4.4e-89 332.8 470 61.5
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 9.9e-89 331.6 438 67.1
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.7e-88 330.9 450 69.8
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 2.2e-88 330.5 432 67.8
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 8.4e-88 328.6 468 60.9
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 1.1e-87 328.2 429 69.9
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 4.1e-87 326.2 474 62.9
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.2e-86 324.7 457 66.5
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 2.1e-86 323.9 448 61.8
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 3.5e-86 323.2 438 66.2
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 7.8e-86 322.0 430 66.0
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 7.8e-86 322.0 450 68.7
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 7.8e-86 322.0 382 73.8
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 1.0e-85 321.6 497 62.4
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 1.3e-85 321.2 443 65.7
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 3.0e-85 320.1 391 60.6
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 3.0e-85 320.1 446 69.3
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 3.9e-85 319.7 437 63.6
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 6.6e-85 318.9 441 66.0
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 3.3e-84 316.6 467 61.7
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 5.6e-84 315.8 441 65.3
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 5.6e-84 315.8 441 65.8
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 5.6e-84 315.8 441 65.8
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 7.3e-84 315.5 430 65.8
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 1.2e-83 314.7 434 68.4
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 2.1e-83 313.9 457 65.6
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 2.8e-83 313.5 448 68.3
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 4.7e-83 312.8 441 68.9
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 6.2e-83 312.4 448 68.1
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 2.4e-82 310.5 435 69.7
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 2.4e-82 310.5 459 65.4
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 5.2e-82 309.3 463 63.1
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 2.9e-80 303.5 417 63.1
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 2.9e-80 303.5 457 63.2
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 4.2e-79 299.7 441 63.5
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 5.4e-79 299.3 447 59.1
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 1.6e-78 297.7 434 57.6
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.9e-76 290.8 467 64.0
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 9.0e-74 282.0 444 60.8
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 2.0e-73 280.8 417 60.0
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 5.8e-73 279.3 431 65.0
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 7.6e-73 278.9 431 65.2
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 1.7e-72 277.7 462 61.5
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 4.8e-67 259.6 357 75.9
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 7.6e-65 252.3 441 56.2
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.9e-64 250.4 459 44.4
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 5.1e-61 239.6 259 70.7
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 3.3e-60 236.9 456 44.7
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.4e-58 231.5 459 55.1
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 3.8e-56 223.4 241 53.5
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 8.4e-56 222.2 198 58.6
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.2e-54 218.4 462 53.5
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 5.0e-48 196.4 328 65.2
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.1e-44 185.3 322 65.2
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 3.3e-44 183.7 364 64.3
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.5e-41 174.9 365 38.1
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 2.2e-40 171.0 151 57.0
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 4.8e-35 153.3 268 54.9
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 4.5e-33 146.7 369 42.3
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 1.2e-30 138.7 358 39.4
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 1.0e-29 135.6 145 77.2
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 1.5e-28 131.7 413 39.7
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 2.0e-28 131.3 110 61.8
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 3.3e-28 130.6 271 41.0
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.7e-27 128.3 271 64.2
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.4e-26 125.2 299 34.1
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.2e-25 122.1 426 44.6
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 4.8e-19 100.1 98 50.0
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.2e-17 95.5 413 46.0
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.9e-16 90.9 90 54.4
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 6.5e-16 89.7 154 37.0
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 2.1e-14 84.7 102 44.1
TAR374G0834 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.8e-13 81.6 67 64.2
TPR.G88 Trifolium pratense HOM05D005860 ORTHO05D006977 2.3e-13 81.3 60 60.0
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.3e-11 75.5 73 52.1
Mapoly0007s0012 Marchantia polymorpha HOM05D005860 ORTHO05D006977 1.1e-10 72.4 154 33.1
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 1.8e-10 71.6 67 59.7
vmacro18327 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.2e-06 58.9 107 49.5
Migut.H01349 Erythranthe guttata HOM05D001557 ORTHO05D001299 2.8e-06 57.8 139 27.3
Ciclev10016031m.g Citrus clementina HOM05D001557 ORTHO05D001299 3.6e-06 57.4 140 38.6
PGR119G1320 Punica granatum HOM05D001557 ORTHO05D001299 8.0e-06 56.2 150 28.7


User provided reference genes

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