Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 4109.7 2286 100.0
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 3741.8 2293 91.3
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 2691.4 2550 64.8
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 2600.5 2547 63.6
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1895.9 2536 51.1
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1793.5 2537 49.3
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1786.9 2534 49.3
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1731.8 2411 49.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1698.3 2543 48.0
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1674.8 2297 50.2
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1557.7 2563 45.8
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1557.3 2573 44.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1555.4 2532 46.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1551.2 2550 44.8
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1524.6 2544 44.4
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1519.6 2546 44.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1518.4 2545 44.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1505.0 2548 43.3
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1502.3 2585 43.7
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1498.4 2553 43.8
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1491.5 2549 43.5
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1476.1 2528 44.6
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1474.9 2548 43.4
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1473.0 2552 43.9
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1461.0 2574 42.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1455.7 2379 45.7
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1451.8 2541 43.6
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1451.0 2529 43.8
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1441.4 2521 43.5
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1436.8 2527 43.5
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1401.7 2525 43.6
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1390.6 2528 43.2
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1383.2 2524 42.9
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1381.3 2557 41.7
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1381.3 2545 42.6
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1379.8 2553 41.9
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1376.7 2607 41.8
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1370.9 2542 41.9
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1368.6 2555 41.8
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1364.0 2619 41.6
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1360.5 2536 43.0
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1358.6 2614 41.5
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1354.3 2493 42.2
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1351.7 2613 41.5
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1342.0 2518 42.5
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1331.2 2542 41.5
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1329.3 2536 41.5
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1325.8 2187 45.8
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1321.6 2483 41.8
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1320.1 2537 41.2
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1315.1 2531 42.1
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1307.7 2474 42.1
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1303.5 2529 41.2
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1296.6 2550 40.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1282.7 2498 41.8
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1278.8 2499 41.2
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1276.2 2489 41.4
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1268.1 2529 40.8
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1265.4 2524 41.1
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1263.4 2527 40.5
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1258.8 2539 40.6
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1255.7 2505 40.5
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1245.3 2674 39.5
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1232.2 2050 45.0
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1223.8 2524 39.3
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1217.2 2556 39.7
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1210.7 2531 39.7
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1209.1 2518 40.1
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1203.0 2541 39.8
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1198.0 2583 38.4
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1196.4 2517 39.8
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1191.0 2574 39.8
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1183.7 2501 39.8
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1178.3 2536 39.7
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1177.2 2406 39.6
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1171.0 2507 38.9
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1161.4 2518 39.0
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1160.2 2457 38.8
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1154.8 2311 40.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1149.4 2506 38.8
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1122.5 2411 38.3
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1119.4 2511 39.4
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1117.4 2578 38.8
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1111.7 2365 39.0
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1094.7 2507 38.1
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1090.9 2467 38.4
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1090.1 1285 55.0
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 3.8e-308 1062.8 2354 40.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 9.1e-302 1041.6 2394 39.4
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 2.0e-293 1013.8 2340 39.2
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 6.5e-292 1008.8 2369 37.9
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 9.4e-291 1005.0 2532 37.3
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 1.2e-269 934.9 1891 39.8
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 8.9e-265 918.7 2362 36.7
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 3.4e-264 916.8 2286 37.2
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 5.4e-262 909.4 2264 37.7
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 4.1e-254 883.2 2298 37.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 2.3e-249 867.5 2229 36.7
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 6.0e-245 852.8 2237 37.1
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 5.6e-227 793.1 983 52.2
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 7.3e-227 792.7 2296 34.9
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.8e-220 771.5 2574 34.7
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 8.7e-220 769.2 2462 34.0
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 7.6e-208 729.6 2169 34.9
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.3e-188 664.8 1768 36.5
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 5.1e-188 663.7 1704 37.1
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 6.5e-183 646.7 733 55.0
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.3e-178 632.5 2568 31.5
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.2e-163 582.8 817 50.8
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.4e-156 559.3 2190 32.3
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.1e-148 531.6 1485 33.1
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 4.4e-147 527.7 2186 31.9
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.2e-145 521.5 1902 33.6
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.0e-143 516.5 2193 31.9
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.7e-143 515.8 2211 31.4
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.7e-143 515.8 2211 31.4
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 5.0e-143 514.2 1094 40.7
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 5.6e-142 510.8 588 59.5
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.0e-139 502.3 2248 31.2
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.7e-138 498.0 863 45.2
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.4e-131 474.6 781 42.3
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.1e-116 425.2 472 52.1
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 9.9e-107 393.7 1032 35.4
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.4e-105 387.9 1237 31.9
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 2.2e-98 365.9 955 34.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.5e-94 352.4 2741 27.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.3e-94 352.1 518 47.1
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.0e-91 342.8 690 40.7
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 5.0e-74 285.0 1778 28.5
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 3.2e-73 282.3 267 56.2
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.5e-70 273.5 2620 27.3
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.8e-60 240.0 810 36.8
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.5e-59 235.3 2571 27.3
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.1e-56 224.9 2268 27.4
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 5.2e-55 221.9 352 41.5
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.7e-51 209.5 2562 26.7
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.5e-49 203.8 1314 27.8
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 2.0e-46 193.4 259 49.8
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.7e-45 190.3 259 49.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.9e-35 155.2 577 32.1
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 2.8e-32 146.4 979 27.9
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-27 131.0 418 28.9
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.0e-26 126.3 271 36.5
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 8.6e-26 124.8 333 31.8
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.8e-23 117.1 243 39.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.8e-22 112.1 163 47.2
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.7e-21 110.5 210 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 9.2e-20 104.8 1122 27.3
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.0e-18 101.3 258 38.4
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 1.9e-12 80.5 94 54.3
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 3.2e-12 79.7 148 42.6
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.2e-11 77.8 73 52.1
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.6e-11 77.4 313 31.9
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 2.1e-11 77.0 75 62.7
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.6e-11 75.9 226 30.5
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 1.0e-10 74.7 66 54.5
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 3.1e-07 63.2 95 44.2


User provided reference genes

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