Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 0.0e+00 1728.8 883 100.0
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 0.0e+00 1657.9 890 96.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.4e-280 967.6 890 58.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.9e-256 889.0 885 53.3
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 6.5e-256 887.9 874 53.5
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 8.5e-256 887.5 881 52.9
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.6e-254 883.2 891 53.5
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.2e-251 872.8 905 53.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.6e-249 865.9 883 51.9
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-248 863.6 888 52.4
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 4.7e-246 855.1 871 53.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.4e-245 853.6 886 52.5
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.7e-243 846.7 879 51.8
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 8.2e-243 844.3 883 51.3
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.4e-242 843.6 881 52.1
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.4e-242 842.8 922 50.1
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.1e-242 842.0 884 52.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.3e-242 841.6 884 51.1
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.5e-241 838.6 879 51.1
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 7.7e-241 837.8 881 51.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.5e-240 834.7 884 51.7
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-239 833.2 883 52.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 4.2e-239 832.0 885 50.6
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.6e-238 830.1 880 51.6
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.1e-238 829.7 889 49.6
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 8.0e-238 827.8 884 50.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-237 826.6 889 49.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-237 825.1 886 49.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.3e-235 818.1 879 49.4
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.1e-234 815.8 886 48.9
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 7.0e-234 814.7 880 49.7
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.2e-233 813.9 885 49.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.5e-233 812.0 884 50.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 5.9e-233 811.6 883 49.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.9e-231 806.6 744 56.9
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.2e-227 793.1 886 47.9
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-226 790.4 886 47.7
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 4.1e-226 788.9 871 48.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.5e-225 785.8 878 48.7
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-224 783.1 889 48.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.7e-220 768.5 880 47.8
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 7.5e-220 768.1 883 47.6
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 3.7e-219 765.8 523 78.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 4.8e-219 765.4 888 48.1
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.8e-218 763.5 843 47.9
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.5e-217 759.2 743 54.2
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.5e-217 759.2 889 46.6
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.2e-214 750.7 928 46.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.0e-213 747.7 878 46.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.8e-213 746.9 886 46.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 5.2e-213 745.3 892 47.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-211 740.7 903 45.5
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 9.2e-210 734.6 942 44.7
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.0e-209 733.4 883 45.6
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 4.5e-209 732.3 884 44.9
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 4.5e-209 732.3 948 43.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.3e-208 730.7 884 45.0
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 3.9e-208 729.2 897 45.3
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 8.6e-208 728.0 819 47.6
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.2e-206 724.2 950 45.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.8e-206 723.0 894 45.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.0e-205 721.1 866 47.5
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.4e-204 715.7 888 45.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.4e-203 711.8 854 46.6
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.0e-201 706.8 884 43.4
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 7.8e-201 704.9 694 53.3
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 5.6e-199 698.7 894 44.0
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 5.6e-199 698.7 889 43.5
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 7.3e-199 698.4 885 44.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.2e-198 697.6 740 50.4
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 2.8e-198 696.4 906 43.3
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 8.0e-198 694.9 897 44.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.4e-197 694.1 885 44.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.3e-197 693.3 884 42.4
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.2e-194 682.9 888 45.0
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 4.3e-191 672.5 693 49.9
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 5.6e-191 672.2 889 41.8
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 7.3e-191 671.8 888 42.2
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 7.3e-191 671.8 889 41.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 3.6e-190 669.5 889 41.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.2e-190 668.7 896 43.1
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 4.0e-189 666.0 884 41.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-188 664.5 889 41.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.7e-187 659.4 647 54.6
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 6.4e-187 658.7 889 42.3
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.1e-186 655.2 913 42.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 3.5e-185 652.9 888 43.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.1e-184 649.0 838 44.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 8.6e-184 648.3 930 42.5
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.1e-182 643.7 885 41.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 6.2e-182 642.1 891 43.4
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 5.2e-181 639.0 894 41.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.3e-179 634.4 866 42.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.3e-176 623.6 889 41.8
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.3e-175 619.4 715 48.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.8e-173 614.0 880 42.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.4e-173 613.6 739 46.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.4e-172 609.8 891 40.6
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 6.9e-165 585.5 699 46.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.2e-163 580.5 892 39.6
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.9e-163 580.1 857 40.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.9e-163 579.3 789 41.7
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 9.6e-159 565.1 694 45.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.9e-155 553.5 630 47.3
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-154 551.6 673 44.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.4e-149 533.9 676 45.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.3e-144 517.3 896 36.6
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.5e-140 504.6 881 37.8
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 7.7e-132 475.7 748 39.3
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 9.7e-127 458.8 648 40.0
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.3e-120 437.6 557 44.2
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 3.5e-116 423.7 907 33.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-107 395.2 561 38.3
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 2.1e-105 387.9 751 35.8
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 5.2e-104 383.3 700 35.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 6.6e-99 366.3 973 29.2
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 4.0e-96 357.1 255 71.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.7e-91 341.7 957 29.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.7e-91 341.7 957 29.5
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.3e-90 336.3 234 73.5
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 3.6e-89 334.0 236 72.0
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 4.7e-89 333.6 744 30.6
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 8.6e-83 312.8 595 33.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.4e-77 295.4 822 29.3
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.9e-77 295.0 221 67.0
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.8e-70 270.8 185 74.6
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 2.1e-68 265.0 199 62.3
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.7e-68 264.6 349 40.4
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 2.3e-67 261.5 561 33.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.1e-67 260.4 186 72.6
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 6.6e-67 260.0 766 28.2
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 9.6e-58 229.6 192 59.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-55 222.6 256 48.4
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.9e-54 218.0 191 56.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.1e-50 206.1 335 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 5.6e-50 203.8 328 38.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.1e-48 198.0 139 73.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.5e-47 194.1 196 50.5
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-42 177.6 216 44.0
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 8.1e-41 173.3 222 43.7
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.5e-39 169.1 222 42.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 9.3e-37 159.8 191 44.0
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.3e-35 155.2 248 38.7
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.4e-34 150.2 204 41.7
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.1e-33 148.7 143 56.6
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.5e-31 142.5 246 38.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.6e-31 141.7 216 40.7
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.2e-30 138.7 108 62.0
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.9e-27 127.9 77 84.4
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.5e-23 114.4 289 30.1
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-22 112.5 87 65.5
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.1e-21 109.8 83 65.1
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.4e-21 109.4 82 65.9
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.2e-21 108.2 100 54.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.7e-20 105.1 185 34.6
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 7.9e-20 103.6 228 31.1
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.1e-18 99.8 193 35.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-14 86.3 180 34.4
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 5.2e-11 74.3 130 35.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.3e-10 71.6 111 36.9
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.7e-10 70.1 88 40.9
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.6e-07 62.0 43 69.8
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-06 58.9 74 40.5


User provided reference genes

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