Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 3.9e-301 1037.3 525 100.0
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 7.2e-295 1016.5 525 98.1
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 5.5e-178 628.2 534 61.4
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 5.4e-157 558.5 533 56.3
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 7.2e-154 548.1 514 56.6
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.2e-153 547.4 534 56.4
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 4.4e-151 538.9 534 54.5
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 3.7e-142 509.2 526 52.1
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 2.7e-140 503.1 533 52.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.3e-139 500.0 553 50.8
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 5.2e-136 488.8 533 49.7
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.3e-134 484.2 530 51.1
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.7e-134 483.8 530 51.1
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.7e-134 483.8 557 49.9
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 8.3e-134 481.5 567 48.1
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 2.0e-132 476.9 533 50.1
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.7e-132 476.5 533 49.0
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 6.6e-131 471.9 532 48.7
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.5e-130 469.9 533 50.8
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.3e-130 469.2 532 49.6
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 7.3e-130 468.4 537 48.0
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 7.3e-130 468.4 533 50.5
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 9.5e-130 468.0 513 50.3
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.2e-129 467.6 533 50.3
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.2e-129 467.6 534 50.0
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.1e-129 466.8 548 48.2
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.8e-128 461.8 530 48.3
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.2e-127 461.1 535 49.3
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 9.8e-127 458.0 529 47.4
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.3e-126 457.6 537 49.7
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.7e-126 456.1 542 48.7
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 3.7e-126 456.1 533 48.4
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 8.3e-126 454.9 534 46.6
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 7.1e-125 451.8 533 48.2
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.7e-124 449.9 530 46.8
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 5.1e-123 445.7 536 47.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.5e-122 444.1 530 48.1
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.1e-120 438.0 524 48.5
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.4e-120 437.6 531 48.6
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.1e-120 436.4 534 48.5
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.3e-118 431.0 535 47.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 3.8e-118 429.5 525 47.6
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 3.2e-117 426.4 508 47.8
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.1e-116 423.7 539 46.8
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 2.1e-116 423.7 539 46.8
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 7.8e-116 421.8 451 51.2
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.0e-115 421.4 560 45.7
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 2.3e-115 420.2 528 45.8
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.9e-114 417.2 531 46.7
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 2.1e-113 413.7 540 45.6
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 6.2e-113 412.1 539 47.1
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 8.1e-113 411.8 536 47.4
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.4e-112 411.0 541 46.2
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 4.0e-112 409.5 532 45.5
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 6.9e-112 408.7 520 45.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 6.9e-112 408.7 551 43.9
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 8.9e-112 408.3 542 44.8
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.7e-110 404.1 507 46.4
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.2e-110 403.7 550 44.5
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.4e-110 401.7 546 44.3
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.4e-110 401.7 546 44.5
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 8.4e-110 401.7 533 44.1
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.2e-109 399.8 560 43.8
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 4.2e-109 399.4 533 44.7
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 5.4e-109 399.1 551 42.8
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.4e-109 399.1 546 44.3
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 5.4e-109 399.1 528 46.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.7e-108 396.7 525 43.6
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 2.7e-108 396.7 531 41.2
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.5e-108 396.4 535 43.6
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.6e-108 396.0 548 43.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 3.0e-107 393.3 536 44.8
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.5e-106 390.2 534 43.6
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 7.3e-106 388.7 538 42.8
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 6.2e-105 385.6 533 43.0
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.1e-104 384.8 533 46.2
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.0e-103 380.6 543 42.4
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 3.4e-103 379.8 534 42.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.9e-102 376.7 606 39.6
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.9e-101 374.0 534 43.4
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.9e-101 374.0 533 44.1
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 3.2e-101 373.2 531 43.7
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.4e-101 372.5 531 42.4
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.1e-100 370.5 528 42.2
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.3e-99 367.9 532 41.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 5.1e-99 365.9 536 41.4
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.7e-99 365.2 531 42.2
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.1e-96 358.2 532 41.4
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 7.6e-95 352.1 522 39.3
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.2e-94 350.5 548 42.2
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.9e-93 347.4 531 40.3
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 5.5e-93 345.9 436 46.8
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.2e-92 344.7 531 40.5
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 2.1e-92 344.0 416 47.6
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.7e-92 343.6 531 40.5
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.7e-92 343.6 531 40.5
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 3.5e-92 343.2 531 40.5
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 3.0e-91 340.1 533 39.2
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 3.9e-91 339.7 386 49.7
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.7e-91 339.0 529 39.5
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.5e-90 337.8 563 35.9
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.4e-90 335.5 523 39.6
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.6e-89 334.3 483 43.3
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.2e-89 332.4 681 35.8
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 6.2e-89 332.4 386 49.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.8e-88 330.9 531 39.7
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 6.9e-88 328.9 543 39.4
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.5e-87 327.8 562 37.0
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.5e-85 320.5 531 38.4
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 7.1e-85 318.9 464 42.5
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 9.3e-85 318.5 531 38.4
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 2.1e-84 317.4 576 37.7
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 2.2e-78 297.4 535 37.8
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 6.5e-78 295.8 537 36.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 8.5e-78 295.4 564 35.1
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 1.4e-77 294.7 331 49.8
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 6.7e-75 285.8 538 35.9
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.5e-74 284.6 337 51.0
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 2.0e-66 257.7 275 51.6
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 1.7e-65 254.6 392 41.1
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.9e-62 243.8 444 34.2
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 2.7e-60 237.3 220 56.4
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 3.9e-59 233.4 486 34.6
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.0e-54 218.8 269 48.0
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 4.2e-53 213.4 278 44.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.0e-51 208.8 446 32.1
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.0e-51 208.8 354 38.1
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.1e-48 196.8 253 43.9
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 9.1e-48 195.7 171 57.9
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 8.3e-41 172.6 301 38.9
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.3e-38 165.2 134 59.7
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 2.7e-31 141.0 328 35.1
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 9.5e-29 132.5 182 39.6
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 4.7e-28 130.2 154 43.5
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.0e-27 129.0 154 44.2
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 4.0e-27 127.1 160 44.4
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 3.4e-26 124.0 254 35.8
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 7.5e-26 122.9 148 43.2
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.3e-25 122.1 541 24.6
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 4.9e-25 120.2 136 44.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.7e-23 114.4 658 23.6
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 2.3e-22 111.3 211 35.1
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 7.3e-21 106.3 134 43.3
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 1.1e-19 102.4 116 45.7
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.8e-19 101.7 188 31.4
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.1e-12 78.2 218 28.4
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.1e-11 75.9 210 29.0
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 3.9e-06 57.4 96 33.3


User provided reference genes

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