Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.5e-132 476.1 232 100.0
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 5.5e-130 467.6 232 97.4
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.2e-105 386.7 233 78.5
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 8.0e-105 384.0 233 78.5
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 3.0e-104 382.1 255 73.7
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 6.8e-104 380.9 227 77.5
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.5e-103 379.8 225 80.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 9.8e-103 377.1 233 76.4
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.8e-102 374.8 233 76.8
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.3e-102 374.0 232 75.4
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.4e-101 372.5 224 76.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.4e-101 372.5 233 77.7
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 3.1e-101 372.1 227 79.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.1e-101 371.7 233 76.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 5.4e-101 371.3 229 76.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.7e-100 369.0 235 74.9
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.3e-99 366.7 233 76.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.3e-99 366.7 227 74.9
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.3e-99 366.7 227 74.9
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.7e-99 366.3 230 73.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.3e-99 365.9 227 75.8
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.3e-99 365.9 230 76.1
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.8e-99 365.2 227 75.3
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.8e-99 365.2 225 76.4
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 5.0e-99 364.8 232 75.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.6e-99 364.0 230 76.1
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-98 363.6 227 74.4
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-98 363.6 227 74.4
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.1e-98 363.6 227 74.9
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.5e-98 363.2 227 74.0
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.9e-98 362.8 230 75.7
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 3.2e-98 362.1 230 75.2
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 3.2e-98 362.1 232 75.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 4.2e-98 361.7 232 74.6
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 4.2e-98 361.7 230 74.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.2e-97 360.1 222 74.3
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-97 359.4 214 78.0
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.1e-97 359.4 230 73.9
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 4.7e-97 358.2 224 73.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.0e-96 357.1 232 73.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.4e-96 356.7 234 74.4
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.4e-96 356.7 241 72.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-96 356.7 230 72.6
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.0e-96 355.5 227 73.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.5e-95 353.2 227 74.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.6e-95 352.4 233 72.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.4e-95 352.1 239 71.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 3.4e-95 352.1 227 71.4
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.4e-95 351.7 227 74.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 9.8e-95 350.5 235 73.2
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.3e-94 350.1 230 74.8
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 2.2e-94 349.4 227 73.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.2e-94 349.4 233 73.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 3.7e-94 348.6 233 73.0
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 4.9e-94 348.2 237 71.7
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 6.3e-94 347.8 233 73.4
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.3e-94 347.8 233 71.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.3e-94 347.4 245 69.0
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.3e-94 347.4 245 69.4
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.1e-93 347.1 233 73.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.4e-93 346.7 233 71.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 2.4e-93 345.9 230 73.9
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.1e-93 345.1 227 73.1
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 4.1e-93 345.1 232 73.3
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 5.4e-93 344.7 226 72.6
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 9.2e-93 344.0 233 70.8
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.2e-92 343.6 227 74.0
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.6e-92 343.2 239 69.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.0e-92 342.8 235 71.5
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.0e-92 342.8 235 71.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.0e-92 342.8 234 69.7
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.7e-92 342.4 227 73.6
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 5.9e-92 341.3 219 72.6
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 7.8e-92 340.9 233 72.5
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 7.8e-92 340.9 214 73.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.0e-91 340.5 222 72.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.0e-91 340.5 236 72.0
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.0e-91 340.5 236 72.0
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.0e-91 340.5 229 71.2
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-90 337.0 227 72.7
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.5e-90 336.7 227 71.8
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 2.5e-90 335.9 224 70.5
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.2e-89 333.6 231 67.5
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.1e-89 332.8 241 67.2
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 2.1e-89 332.8 232 70.3
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.1e-89 332.8 244 69.7
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-88 330.5 238 64.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.8e-88 329.7 232 69.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.0e-88 328.9 222 68.5
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 3.0e-88 328.9 222 68.5
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.0e-88 328.9 222 68.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 8.9e-88 327.4 222 67.6
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 8.9e-88 327.4 230 68.7
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.5e-87 326.6 223 69.5
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.0e-87 326.2 222 67.6
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.6e-87 325.9 222 67.1
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.6e-87 325.9 236 69.1
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.4e-87 325.5 227 68.3
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.4e-87 325.5 286 60.5
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.4e-87 325.5 227 70.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 5.7e-87 324.7 227 71.4
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.7e-87 324.7 222 67.1
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.5e-87 324.3 240 65.0
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.7e-86 323.2 235 67.2
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.7e-86 323.2 235 67.7
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.2e-86 322.8 240 65.0
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.2e-86 322.8 219 67.6
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.9e-86 322.4 232 68.1
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 4.9e-86 321.6 240 64.6
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 4.9e-86 321.6 240 64.6
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.9e-86 321.6 219 66.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.4e-86 321.2 234 65.0
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 8.3e-86 320.9 238 63.4
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.4e-85 320.1 240 64.6
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.8e-85 319.7 233 68.7
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 7.8e-84 314.3 233 67.0
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.3e-82 308.9 227 64.3
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.1e-80 303.9 225 66.7
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.2e-80 301.6 227 66.5
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.5e-79 300.1 185 76.2
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 3.4e-79 298.9 237 61.2
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 5.8e-79 298.1 237 62.4
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.9e-75 285.4 180 74.4
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-74 282.7 182 75.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 9.5e-74 280.8 227 63.9
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.1e-73 279.6 240 60.8
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 4.7e-73 278.5 235 62.6
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.4e-71 272.3 225 62.2
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.4e-69 266.2 212 59.9
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.6e-65 252.3 211 54.5
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.2e-64 248.4 193 66.3
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.5e-63 246.9 162 73.5
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.0e-63 246.5 159 72.3
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.7e-62 243.4 157 70.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 4.1e-61 238.8 190 67.9
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 5.1e-51 205.3 145 72.4
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 7.3e-50 201.4 222 47.3
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.6e-49 200.3 211 47.4
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.6e-49 199.1 120 74.2
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 8.1e-49 198.0 201 51.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.4e-48 196.4 221 49.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 5.3e-48 195.3 186 55.4
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.8e-46 189.1 174 54.6
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 3.3e-42 176.0 132 59.8
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.9e-38 162.2 230 40.0
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 6.7e-35 151.8 90 75.6
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 6.7e-35 151.8 158 53.2
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 9.6e-34 147.9 99 68.7
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 6.9e-32 141.7 152 46.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 9.0e-32 141.4 216 38.9
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 6.5e-30 135.2 93 68.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.3e-26 122.9 99 62.6
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 5.7e-26 122.1 104 59.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 8.5e-22 108.2 90 55.6
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.1e-20 103.6 194 29.4
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.1e-20 103.6 65 72.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.7e-18 95.5 61 72.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.7e-18 95.5 61 72.1
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.7e-18 95.5 108 45.4
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.4e-18 95.1 72 65.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.7e-17 94.0 73 67.1
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.8e-17 93.2 72 63.9
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.2e-13 78.6 48 75.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.6e-12 77.4 70 58.6
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.1e-12 77.0 44 81.8
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 5.7e-10 68.9 139 33.1
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.1e-08 62.8 53 66.0
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.0e-07 60.5 37 70.3
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 4.5e-07 59.3 43 65.1
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 5.9e-07 58.9 50 64.0
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 7.7e-07 58.5 40 60.0


User provided reference genes

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