Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.5e-83 312.8 149 100.0
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.5e-83 312.8 149 100.0
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 9.5e-67 256.9 149 78.5
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.2e-64 250.0 149 77.2
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.5e-64 249.6 149 75.8
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.4e-64 248.4 144 75.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.4e-64 248.4 144 77.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.7e-64 247.7 149 74.5
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 5.7e-64 247.7 149 75.8
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.3e-63 246.5 144 77.1
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.3e-63 246.5 144 76.4
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-63 246.5 149 75.2
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.7e-63 246.1 144 76.4
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.7e-63 246.1 144 76.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.7e-63 246.1 144 76.4
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 2.2e-63 245.7 149 76.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 2.2e-63 245.7 144 77.8
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.8e-63 245.4 143 75.5
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.8e-63 245.4 144 77.8
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.9e-63 244.6 143 75.5
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 6.3e-63 244.2 144 75.7
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 8.3e-63 243.8 144 75.7
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 8.3e-63 243.8 144 75.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.1e-62 243.4 144 76.4
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.4e-62 243.0 149 74.5
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.8e-62 242.7 144 75.7
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.1e-62 241.9 144 77.8
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.1e-62 241.5 144 76.4
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 4.1e-62 241.5 149 72.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 5.4e-62 241.1 144 75.0
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 7.0e-62 240.7 143 76.9
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 9.2e-62 240.4 149 73.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.2e-61 240.0 144 75.0
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.0e-61 239.2 149 73.8
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 2.0e-61 239.2 144 77.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 2.0e-61 239.2 144 72.2
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.7e-61 238.8 143 74.8
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.7e-61 238.8 148 73.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.5e-61 238.4 144 72.9
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.5e-61 238.4 144 74.3
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.5e-61 238.0 141 77.3
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 4.5e-61 238.0 143 74.8
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.5e-61 238.0 142 76.1
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.0e-60 236.9 141 76.6
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.0e-60 236.9 144 76.4
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.0e-60 236.9 144 74.3
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.0e-60 236.9 142 75.4
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.0e-60 236.9 149 72.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.0e-60 236.9 149 72.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.3e-60 236.5 147 72.1
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-60 236.5 144 74.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.7e-60 236.1 145 73.1
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.7e-60 236.1 144 74.3
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.3e-60 235.7 145 73.1
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 2.3e-60 235.7 143 74.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 3.8e-60 235.0 144 74.3
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.1e-59 233.4 144 72.2
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.5e-59 233.0 144 71.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.5e-59 233.0 144 70.8
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.9e-59 232.6 145 72.4
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.9e-59 232.6 144 73.6
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.9e-59 232.6 144 70.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 2.5e-59 232.3 144 70.1
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.5e-59 232.3 143 72.7
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.3e-59 231.9 144 70.1
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 3.3e-59 231.9 144 70.1
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 3.3e-59 231.9 144 70.1
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 3.3e-59 231.9 144 70.1
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.6e-59 231.1 145 71.7
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 7.3e-59 230.7 144 70.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 7.3e-59 230.7 139 74.8
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 7.3e-59 230.7 141 74.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 7.3e-59 230.7 143 74.8
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 9.5e-59 230.3 149 69.8
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 9.5e-59 230.3 143 72.0
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.2e-58 229.9 144 70.8
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.2e-58 229.9 149 70.5
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.1e-58 229.2 144 69.4
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.8e-58 228.8 144 68.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 4.7e-58 228.0 144 69.4
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-58 228.0 143 72.0
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-58 228.0 143 72.0
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 4.7e-58 228.0 136 75.0
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 6.1e-58 227.6 139 70.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 6.1e-58 227.6 144 68.1
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 6.1e-58 227.6 144 68.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 8.0e-58 227.3 144 67.4
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 8.0e-58 227.3 143 72.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.0e-57 226.9 144 68.1
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.0e-57 226.9 144 72.2
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.4e-57 226.5 146 71.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.8e-57 226.1 144 68.8
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.8e-57 226.1 147 69.4
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 3.0e-57 225.3 143 71.3
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.0e-57 224.9 143 71.3
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 4.0e-57 224.9 146 69.2
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 8.9e-57 223.8 143 72.0
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 8.9e-57 223.8 144 67.4
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 4.4e-56 221.5 146 68.5
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.3e-55 219.9 143 67.1
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.3e-55 219.9 145 67.6
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.3e-55 219.9 144 67.4
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 3.7e-55 218.4 144 70.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.4e-54 216.5 143 67.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.1e-54 214.9 139 69.8
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 7.0e-54 214.2 144 68.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.0e-53 212.6 144 68.1
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 6.0e-53 211.1 145 66.2
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.7e-52 209.5 145 66.9
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.6e-52 207.2 138 65.9
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.1e-51 206.8 140 67.9
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.2e-50 203.4 124 75.8
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.1e-50 202.6 143 66.4
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 8.9e-49 197.2 144 61.1
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.7e-44 183.0 109 78.0
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 6.2e-42 174.5 144 61.1
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 3.1e-41 172.2 144 57.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.4e-40 168.7 123 65.0
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.9e-38 162.9 124 62.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.2e-37 160.2 123 58.5
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 3.0e-36 155.6 103 68.0
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 3.9e-36 155.2 149 47.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 9.5e-35 150.6 123 56.1
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.6e-34 149.8 90 78.9
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.8e-34 149.1 142 47.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 8.1e-34 147.5 150 48.7
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.8e-31 138.7 143 50.3
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.5e-27 126.7 150 44.0
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.9e-27 126.3 150 44.0
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 4.3e-27 125.2 144 47.2
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-26 122.5 162 45.1
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-26 121.7 162 45.1
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 6.2e-26 121.3 128 50.0
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.1e-25 120.6 150 42.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.9e-22 109.8 152 39.5
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.1e-19 100.5 67 74.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 3.4e-16 89.0 120 35.8
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 7.1e-14 81.3 62 56.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 8.7e-12 74.3 53 62.3
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 4.8e-10 68.6 120 30.8
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 8.1e-10 67.8 62 54.8
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.4e-09 66.2 44 70.5
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.0e-09 65.5 58 55.2
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 7.6e-08 61.2 48 54.2
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 4.2e-06 55.5 46 52.2


User provided reference genes

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