Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5268 Papaver somniferum HOM05D000045 ORTHO05D035228 6.7e-66 253.8 125 100.0
PSO782G4013 Papaver somniferum HOM05D000045 ORTHO05D000067 6.9e-63 243.8 124 96.0
PSO017G2321 Papaver somniferum HOM05D000045 ORTHO05D000067 8.5e-61 236.9 136 87.5
PSO206G0012 Papaver somniferum HOM05D000045 ORTHO05D000067 4.4e-25 118.2 125 48.8
PSO447G0378 Papaver somniferum HOM05D000045 ORTHO05D000067 1.7e-24 116.3 119 50.4
PSO017G6906 Papaver somniferum HOM05D000045 ORTHO05D000067 3.7e-24 115.2 119 50.4
PSO541G1553 Papaver somniferum HOM05D000045 ORTHO05D000067 4.9e-24 114.8 125 48.0
FvH4_3g22481 Fragaria vesca HOM05D000045 ORTHO05D035562 1.6e-22 109.8 117 47.0
PSO063G3173 Papaver somniferum HOM05D000045 ORTHO05D000067 4.6e-22 108.2 113 44.2
FvH4_2g38071 Fragaria vesca HOM05D000045 ORTHO05D000067 1.7e-21 106.3 117 45.3
CANSAT35G0619 Cannabis sativa HOM05D000045 ORTHO05D000067 2.3e-21 105.9 118 47.5
Prupe.4G268600 Prunus persica HOM05D000045 ORTHO05D000611 1.1e-20 103.6 80 62.5
RcHm_v2.0_Chr6g0276821 Rosa chinensis HOM05D000045 ORTHO05D000067 2.5e-20 102.4 125 44.0
Prupe.5G094100 Prunus persica HOM05D000045 ORTHO05D000611 3.3e-20 102.1 80 62.5
CANSAT11G1643 Cannabis sativa HOM05D000045 ORTHO05D000611 1.2e-19 100.1 83 55.4
Rhsim03G0106600 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.6e-19 98.6 117 41.0
PSO675G1270 Papaver somniferum HOM05D000045 ORTHO05D000067 2.0e-17 92.8 64 67.2
CANSAT01G2577 Cannabis sativa HOM05D000045 ORTHO05D000067 5.8e-17 91.3 95 48.4
CANSAT78G0044 Cannabis sativa HOM05D000045 ORTHO05D000067 5.8e-17 91.3 95 48.4
Cc00_g01440 Coffea canephora HOM05D000045 ORTHO05D000611 2.9e-16 89.0 115 40.9
COL.COLO4_20433 Corchorus olitorius HOM05D000045 ORTHO05D000067 8.3e-16 87.4 81 50.6
COL.COLO4_23494 Corchorus olitorius HOM05D000045 ORTHO05D000067 8.3e-16 87.4 81 50.6
PSO017G2392 Papaver somniferum HOM05D000045 ORTHO05D000067 3.0e-13 79.0 41 92.7
PSO063G1714 Papaver somniferum HOM05D000045 ORTHO05D000067 3.9e-13 78.6 123 37.4
QL01p039642 Quercus lobata HOM05D000045 ORTHO05D000067 3.9e-13 78.6 94 42.6
QL04p049080 Quercus lobata HOM05D000045 ORTHO05D000067 3.9e-13 78.6 94 42.6
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 6.6e-13 77.8 128 35.9
CANSAT64G2947 Cannabis sativa HOM05D000045 ORTHO05D000067 1.9e-12 76.3 65 56.9
Cfa008288 Carpinus fangiana HOM05D000045 ORTHO05D000067 2.5e-12 75.9 119 37.0
Migut.F01137 Erythranthe guttata HOM05D000045 ORTHO05D000067 7.3e-12 74.3 109 39.4
Rhsim09G0196900 Rhododendron simsii HOM05D000045 ORTHO05D000067 9.5e-12 73.9 105 40.0
CiPaw.03G103400 Carya illinoinensis HOM05D000045 ORTHO05D000067 3.6e-11 72.0 119 32.8
Cpa.g.sc107.20 Carica papaya HOM05D000045 ORTHO05D000067 4.7e-11 71.6 123 36.6
MSTRG.8443 Avicennia marina HOM05D000045 ORTHO05D000067 6.2e-11 71.2 116 35.3
Prupe.2G291000 Prunus persica HOM05D000045 ORTHO05D000067 1.4e-10 70.1 119 37.0
Dinv08765 Davidia involucrata HOM05D000045 ORTHO05D000611 1.8e-10 69.7 106 36.8
Os07g0615900 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 1.8e-10 69.7 72 47.2
Dinv28471 Davidia involucrata HOM05D000045 ORTHO05D000067 2.3e-10 69.3 69 50.7
Atru.chr5.514 Acer truncatum HOM05D000045 ORTHO05D000067 4.0e-10 68.6 125 36.0
Rhsim01G0129000 Rhododendron simsii HOM05D000045 ORTHO05D035228 4.0e-10 68.6 105 31.4
Duzib205G0811 Durio zibethinus HOM05D000045 ORTHO05D000067 5.2e-10 68.2 131 33.6
Phvul.007G067000 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 6.8e-10 67.8 119 38.7
Thecc.03G171700 Theobroma cacao HOM05D000045 ORTHO05D000067 8.9e-10 67.4 104 37.5
GSVIVG01032951001 Vitis vinifera HOM05D000045 ORTHO05D000611 8.9e-10 67.4 108 35.2
Ciclev10018794m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.2e-09 67.0 113 36.3
MSTRG.100 Avicennia marina HOM05D000045 ORTHO05D000611 2.0e-09 66.2 78 47.4
CSS0011546 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.4e-09 65.5 78 39.7
Dinv04075 Davidia involucrata HOM05D000045 ORTHO05D000611 4.4e-09 65.1 104 34.6
Glyma.10G238500 Glycine max HOM05D000045 ORTHO05D000067 4.4e-09 65.1 66 50.0
Manes.06G144900 Manihot esculenta HOM05D000045 ORTHO05D000067 4.4e-09 65.1 120 38.3
LjContig00238g0008568 Lotus japonicus HOM05D000045 ORTHO05D000067 5.8e-09 64.7 66 50.0
Nn6g35453 Nelumbo nucifera HOM05D000170 ORTHO05D000159 7.5e-09 64.3 107 39.3
CSS0016639 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.9e-09 63.9 78 37.2
AUR62040076 Chenopodium quinoa HOM05D000045 ORTHO05D000067 9.9e-09 63.9 79 44.3
CiPaw.04G032300 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.3e-08 63.5 91 40.7
Duzib147G0739 Durio zibethinus HOM05D000045 ORTHO05D000067 1.7e-08 63.2 69 43.5
CSS0041074 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.2e-08 62.8 78 38.5
Gohir.A09G032100 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.9e-08 62.4 69 43.5
Rhsim02G0126700 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.9e-08 62.4 94 36.2
RcHm_v2.0_Chr1g0376821 Rosa chinensis HOM05D000045 ORTHO05D000067 2.9e-08 62.4 112 31.2
FAN11G3934 Fragaria x ananassa HOM05D029591 ORTHO05D035562 3.7e-08 62.0 77 39.0
Gorai.006G047000 Gossypium raimondii HOM05D000045 ORTHO05D000067 3.7e-08 62.0 127 33.9
QL02p073271 Quercus lobata HOM05D000045 ORTHO05D000067 3.7e-08 62.0 69 43.5
Sabra12G0103000 Salix brachista HOM05D000045 ORTHO05D000067 3.7e-08 62.0 118 33.9
Thecc.04G026200 Theobroma cacao HOM05D000045 ORTHO05D000067 4.9e-08 61.6 69 43.5
TPR.G17425 Trifolium pratense HOM05D000045 ORTHO05D000067 4.9e-08 61.6 117 35.0
TPR.G7496 Trifolium pratense HOM05D000045 ORTHO05D000067 4.9e-08 61.6 114 30.7
CSS0035306 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.4e-08 61.2 78 37.2
COL.COLO4_14274 Corchorus olitorius HOM05D000045 ORTHO05D000835 6.4e-08 61.2 66 47.0
FvH4_7g29092 Fragaria vesca HOM05D000045 ORTHO05D000067 6.4e-08 61.2 112 31.2
CANSAT64G1822 Cannabis sativa HOM05D000045 ORTHO05D000067 8.3e-08 60.8 69 42.0
Glyma.05G072100 Glycine max HOM05D000045 ORTHO05D000067 8.3e-08 60.8 112 30.4
Gohir.D09G032200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 8.3e-08 60.8 69 42.0
Gorai.006G037100 Gossypium raimondii HOM05D000045 ORTHO05D000067 8.3e-08 60.8 69 42.0
TAR340G0001 Trochodendron aralioides HOM05D000045 ORTHO05D004773 8.3e-08 60.8 117 33.3
CSS0018197 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.1e-07 60.5 78 37.2
COL.COLO4_29258 Corchorus olitorius HOM05D000045 ORTHO05D009825 1.1e-07 60.5 66 47.0
Rhsim12G0018100 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-07 60.5 94 36.2
CSS0021123 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.9e-07 59.7 74 35.1
RhsimUnG0130200 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.4e-07 59.3 90 35.6
SGA_v2.0_scaffold35G14139 Striga asiatica HOM05D000045 ORTHO05D009940 2.4e-07 59.3 92 37.0
COL.COLO4_04687 Corchorus olitorius HOM05D000045 ORTHO05D000067 3.2e-07 58.9 82 36.6
Potri.015G139300 Populus trichocarpa HOM05D000045 ORTHO05D000067 3.2e-07 58.9 108 34.3
Ciclev10014295m.g Citrus clementina HOM05D000045 ORTHO05D000067 4.1e-07 58.5 67 41.8
COL.COLO4_12964 Corchorus olitorius HOM05D000045 ORTHO05D000067 4.1e-07 58.5 82 36.6
COL.COLO4_25082 Corchorus olitorius HOM05D000045 ORTHO05D004773 4.1e-07 58.5 70 41.4
COL.COLO4_29562 Corchorus olitorius HOM05D000045 ORTHO05D000067 4.1e-07 58.5 82 36.6
Manes.15G155500 Manihot esculenta HOM05D000045 ORTHO05D000067 4.1e-07 58.5 69 42.0
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.4e-07 58.2 88 35.2
CSS0017425 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.4e-07 58.2 65 41.5
CSS0045912 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.4e-07 58.2 65 41.5
MSTRG.24059 Avicennia marina HOM05D000045 ORTHO05D000067 7.1e-07 57.8 90 35.6
CSS0007642 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.1e-07 57.8 65 41.5
Cc00_g03490 Coffea canephora HOM05D000045 ORTHO05D000611 7.1e-07 57.8 76 36.8
FvH4_7g25201 Fragaria vesca HOM05D000127 ORTHO05D035228 7.1e-07 57.8 53 50.9
QL04p026370 Quercus lobata HOM05D000045 ORTHO05D000611 7.1e-07 57.8 66 45.5
HPP92_013275 Vanilla planifolia HOM05D000045 ORTHO05D000067 7.1e-07 57.8 70 41.4
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.2e-06 57.0 87 39.1
Aqoxy2G04137 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 1.2e-06 57.0 64 40.6
Potri.016G058700 Populus trichocarpa HOM05D000045 ORTHO05D000067 1.2e-06 57.0 66 39.4
Rhsim01G0226000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-06 57.0 66 39.4
Rhsim05G0213300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-06 57.0 66 39.4
Rhsim08G0046500 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-06 57.0 69 39.1
Os03g0181600 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 1.6e-06 56.6 70 38.6
Rhsim06G0086700 Rhododendron simsii HOM05D000045 ORTHO05D010036 1.6e-06 56.6 61 42.6
Ciclev10010993m.g Citrus clementina HOM05D000045 ORTHO05D000067 2.1e-06 56.2 66 40.9
Lj2g0023561 Lotus japonicus HOM05D000045 ORTHO05D000067 2.1e-06 56.2 69 39.1
Phvul.004G058200 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 2.1e-06 56.2 69 39.1
Rhsim07G0159000 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.1e-06 56.2 112 33.9
CAN.G3.15 Capsicum annuum HOM05D000045 ORTHO05D000611 2.7e-06 55.8 67 41.8
Os10g0571900 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 2.7e-06 55.8 63 44.4
Atru.chr3.2441 Acer truncatum HOM05D000045 ORTHO05D000067 3.5e-06 55.5 64 43.8
MD01G1197600 Malus domestica HOM05D000045 ORTHO05D000067 3.5e-06 55.5 69 40.6
Rhsim12G0052200 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.5e-06 55.5 75 38.7
TWI56G0811 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.5e-06 55.5 74 40.5
TAR515G0007 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.5e-06 55.5 66 42.4
Aqoxy3G02965 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 4.6e-06 55.1 64 42.2
C01p14000 Brassica napus HOM05D000045 ORTHO05D000067 4.6e-06 55.1 110 32.7
BolC1t01367H Brassica oleracea HOM05D000045 ORTHO05D000067 4.6e-06 55.1 110 32.7
FvH4_3g31442 Fragaria vesca HOM05D000045 ORTHO05D000067 4.6e-06 55.1 64 43.8
PSO017G6877 Papaver somniferum HOM05D000045 ORTHO05D000067 4.6e-06 55.1 53 50.9
TWI53G1228 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.6e-06 55.1 85 36.5
Nitab4.5_0002201g0020 Nicotiana tabacum HOM05D012241 ORTHO05D013823 6.0e-06 54.7 67 40.3
HPP92_009513 Vanilla planifolia HOM05D000045 ORTHO05D000611 6.0e-06 54.7 67 41.8
MBI18_g04364_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 7.8e-06 54.3 67 43.3
Nn1g00200 Nelumbo nucifera HOM05D000045 ORTHO05D000067 7.8e-06 54.3 58 48.3
Psat1g083280 Pisum sativum HOM05D000045 ORTHO05D000067 7.8e-06 54.3 114 27.2


User provided reference genes

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