Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5052 Papaver somniferum HOM05D007578 ORTHO05D009497 5.7e-57 224.6 163 100.0
PSO170G5738 Papaver somniferum HOM05D007578 ORTHO05D009497 8.5e-53 210.7 160 95.6
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 2.9e-16 89.4 163 47.2
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 3.2e-15 85.9 170 61.8
Aqoxy2G01906 Aquilegia oxysepala HOM05D007578 ORTHO05D009497 2.0e-14 83.2 119 76.5
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 3.5e-14 82.4 170 62.4
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 3.0e-13 79.3 163 60.1
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 3.0e-13 79.3 163 60.1
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 1.5e-12 77.0 165 53.9
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 3.3e-12 75.9 160 52.5
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 4.3e-12 75.5 172 52.9
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 4.7e-11 72.0 127 63.0
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 1.1e-10 70.9 163 54.0
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 1.4e-10 70.5 169 45.6
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 1.4e-10 70.5 169 57.4
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 2.3e-10 69.7 137 62.8
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 2.3e-10 69.7 133 52.6
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 4.0e-10 68.9 155 53.5
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 4.0e-10 68.9 153 51.6
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 5.2e-10 68.6 160 45.0
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 5.2e-10 68.6 162 53.7
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 6.8e-10 68.2 149 49.0
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 8.9e-10 67.8 144 56.9
HPP92_014833 Vanilla planifolia HOM05D007578 ORTHO05D009497 1.2e-09 67.4 134 46.3
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 1.5e-09 67.0 147 44.9
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 1.5e-09 67.0 172 55.8
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 2.0e-09 66.6 127 63.8
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 2.6e-09 66.2 169 55.0
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 2.6e-09 66.2 128 61.7
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 3.4e-09 65.9 125 66.4
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 3.4e-09 65.9 172 50.6
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 3.4e-09 65.9 171 53.2
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 5.8e-09 65.1 169 54.4
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 5.8e-09 65.1 148 52.7
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 5.8e-09 65.1 155 55.5
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 5.8e-09 65.1 122 58.2
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 7.5e-09 64.7 171 55.6
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 7.5e-09 64.7 217 42.9
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 9.8e-09 64.3 165 51.5
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 1.3e-08 63.9 160 53.8
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 1.3e-08 63.9 171 53.8
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 1.3e-08 63.9 154 56.5
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 1.3e-08 63.9 160 46.2
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 1.3e-08 63.9 171 44.4
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 2.2e-08 63.2 176 49.4
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 2.2e-08 63.2 118 60.2
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 2.2e-08 63.2 161 54.0
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 2.2e-08 63.2 161 54.0
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 2.2e-08 63.2 123 61.8
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 2.9e-08 62.8 151 55.0
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 2.9e-08 62.8 153 54.9
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 3.7e-08 62.4 171 45.6
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 3.7e-08 62.4 126 61.1
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 3.7e-08 62.4 142 57.0
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 3.7e-08 62.4 109 63.3
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 3.7e-08 62.4 162 50.0
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 4.9e-08 62.0 140 50.7
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 4.9e-08 62.0 126 51.6
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 6.4e-08 61.6 172 48.8
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 8.3e-08 61.2 170 52.4
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 8.3e-08 61.2 172 52.3
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 8.3e-08 61.2 133 51.1
Atru.chr3.471 Acer truncatum HOM05D007578 ORTHO05D009497 1.1e-07 60.8 161 52.8
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 1.1e-07 60.8 162 52.5
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 1.4e-07 60.5 171 49.7
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 1.9e-07 60.1 172 48.8
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 2.4e-07 59.7 132 49.2
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 2.4e-07 59.7 132 49.2
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 2.4e-07 59.7 160 46.2
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 2.4e-07 59.7 132 53.0
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 4.1e-07 58.9 139 51.8
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 4.1e-07 58.9 171 49.7
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 4.1e-07 58.9 173 46.8
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 5.4e-07 58.5 139 51.1
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 5.4e-07 58.5 140 48.6
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 5.4e-07 58.5 161 47.2
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 7.1e-07 58.2 178 51.1
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 7.1e-07 58.2 173 46.8
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 7.1e-07 58.2 171 43.9
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 9.2e-07 57.8 156 48.1
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 9.2e-07 57.8 156 48.1
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 9.2e-07 57.8 87 50.6
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 9.2e-07 57.8 160 45.6
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 1.2e-06 57.4 166 51.8
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 2.1e-06 56.6 120 57.5
FAN28G2485 Fragaria x ananassa HOM05D007578 ORTHO05D009497 6.0e-06 55.1 129 45.7


User provided reference genes

Program Settings