Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 2.2e-186 655.6 356 100.0
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 6.0e-152 541.2 329 89.7
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 5.0e-98 362.1 356 59.8
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 4.2e-97 359.0 356 56.5
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 2.7e-96 356.3 368 54.9
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 4.4e-94 349.0 365 57.0
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 5.7e-94 348.6 363 57.6
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 2.8e-93 346.3 360 58.1
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 4.8e-93 345.5 368 56.5
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 2.0e-91 340.1 368 55.4
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 2.7e-91 339.7 363 55.4
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 3.5e-91 339.3 365 55.9
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.7e-90 337.0 255 69.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 1.1e-89 334.3 368 53.0
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.5e-89 333.2 356 56.5
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 4.2e-89 332.4 388 53.4
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.2e-89 332.4 365 55.9
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 7.2e-89 331.6 356 56.2
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 2.1e-88 330.1 371 52.3
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 2.7e-88 329.7 380 52.4
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 3.6e-88 329.3 374 52.7
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 3.6e-88 329.3 359 55.4
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 4.7e-88 328.9 363 55.9
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 1.0e-87 327.8 371 51.5
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.3e-87 326.6 360 53.6
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 3.0e-87 326.2 279 65.9
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 3.0e-87 326.2 368 51.6
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 3.0e-87 326.2 368 51.6
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 6.8e-87 325.1 368 54.1
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 8.8e-87 324.7 363 54.8
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 8.8e-87 324.7 362 55.8
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.2e-86 324.3 372 51.6
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.2e-86 324.3 372 51.6
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 2.6e-86 323.2 349 55.3
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 2.6e-86 323.2 368 53.5
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 2.6e-86 323.2 366 53.8
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 3.4e-86 322.8 376 51.3
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.3e-85 320.9 372 54.3
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.3e-85 320.9 363 53.7
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 2.2e-85 320.1 365 53.7
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 2.2e-85 320.1 373 50.4
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 3.7e-85 319.3 363 54.3
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 6.3e-85 318.5 375 52.0
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 6.3e-85 318.5 375 50.7
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.8e-84 317.0 369 52.6
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 1.8e-84 317.0 366 53.0
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.6e-83 313.9 380 50.5
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 2.7e-83 313.2 366 53.8
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 3.5e-83 312.8 366 54.4
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 3.5e-83 312.8 362 53.6
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 4.5e-83 312.4 193 78.8
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 5.9e-83 312.0 366 53.6
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 7.7e-83 311.6 375 53.6
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.0e-82 311.2 359 52.6
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.0e-82 311.2 359 53.2
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.3e-82 310.8 364 51.1
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.2e-82 310.1 380 50.0
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 3.8e-82 309.3 366 53.0
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 6.5e-82 308.5 380 49.7
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.5e-82 308.5 380 49.7
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 8.5e-82 308.1 380 50.0
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 2.5e-81 306.6 366 52.2
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 4.2e-81 305.8 366 52.7
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 7.2e-81 305.1 364 52.2
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 1.2e-80 304.3 259 63.7
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 3.6e-80 302.8 367 52.6
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 6.1e-80 302.0 345 51.9
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.0e-79 301.2 363 53.2
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.0e-79 301.2 195 74.9
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 5.2e-79 298.9 369 48.8
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.6e-78 296.6 361 51.2
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.6e-78 296.6 411 46.0
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 3.4e-78 296.2 334 53.0
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 5.7e-78 295.4 356 55.3
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 9.8e-78 294.7 357 51.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.7e-77 293.9 362 54.1
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 2.8e-77 293.1 364 50.8
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 8.3e-77 291.6 281 58.4
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.1e-76 291.2 217 70.0
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 1.4e-76 290.8 366 49.2
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 1.8e-76 290.4 357 52.4
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 4.1e-76 289.3 364 48.6
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 9.2e-76 288.1 366 53.8
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.2e-75 287.7 364 52.5
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 7.7e-75 285.0 377 49.3
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 1.3e-74 284.3 362 52.8
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 3.8e-74 282.7 209 67.9
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 1.1e-73 281.2 360 49.7
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 1.9e-73 280.4 358 49.7
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 9.5e-73 278.1 196 69.9
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 1.2e-72 277.7 191 70.2
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 4.0e-71 272.7 375 50.1
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 3.4e-70 269.6 356 47.8
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 3.7e-69 266.2 406 46.6
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 4.6e-67 259.2 295 54.9
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 9.5e-65 251.5 263 54.4
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.1e-64 250.4 439 42.1
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 4.7e-64 249.2 281 52.0
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 8.9e-63 245.0 292 58.2
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.0e-62 243.8 292 57.9
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 3.5e-59 233.0 290 55.2
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 1.0e-58 231.5 201 59.2
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 2.8e-56 223.4 189 59.3
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.7e-56 222.6 291 58.1
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 6.2e-56 222.2 329 46.8
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 4.3e-49 199.5 228 47.8
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 6.2e-48 195.7 171 54.4
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 3.1e-47 193.4 205 50.7
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 1.0e-42 178.3 210 47.1
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 1.9e-41 174.1 193 46.6
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.1e-20 105.1 138 42.0
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 5.5e-20 102.8 130 42.3
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.5e-17 94.7 178 34.8
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.6e-16 91.3 82 53.7
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 6.2e-16 89.4 61 77.0
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 3.1e-15 87.0 208 31.7
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.2e-13 80.9 52 80.8
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 5.1e-10 69.7 50 60.0
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 1.5e-09 68.2 71 45.1


User provided reference genes

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