Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 2664.4 1354 100.0
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 2614.7 1354 98.3
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 2002.6 1357 75.6
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1925.6 1370 73.5
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1855.1 1353 71.2
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1836.6 1358 70.8
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1819.3 1359 69.2
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1812.7 1351 70.7
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1795.4 1368 68.9
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1791.9 1345 69.7
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1787.3 1359 69.1
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1785.8 1356 68.1
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1785.0 1352 68.3
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1783.1 1353 68.3
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1782.7 1359 68.4
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1767.7 1350 67.9
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1766.5 1370 67.7
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1757.3 1368 68.1
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1753.8 1340 68.7
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1751.9 1341 68.7
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1751.9 1357 66.9
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1749.9 1350 67.8
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1748.4 1361 67.0
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1745.3 1360 66.9
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1745.3 1351 67.9
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1736.5 1386 65.8
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1733.4 1342 66.5
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1732.6 1342 66.5
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1725.7 1346 66.3
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1723.0 1342 67.4
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1721.8 1344 67.1
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1721.4 1343 66.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1712.2 1346 67.0
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1712.2 1361 66.6
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1709.5 1557 59.5
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1708.7 1354 66.6
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1708.3 1359 66.4
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1706.0 1346 66.5
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1705.3 1376 65.3
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1704.1 1346 65.5
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1702.6 1347 66.6
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1700.3 1412 64.7
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1698.3 1346 65.7
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1695.2 1356 65.6
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1692.2 1358 65.5
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1692.2 1358 65.5
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1691.0 1365 66.4
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1686.4 1355 65.0
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1680.6 1339 65.7
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1671.4 1364 64.9
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1671.0 1355 65.9
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1668.7 1356 64.1
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1662.1 1371 63.8
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1653.6 1349 63.7
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1643.2 1369 63.4
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1641.7 1282 67.8
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1639.8 1345 64.3
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1639.4 1365 64.1
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1637.1 1390 62.8
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1635.9 1349 65.0
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1632.5 1372 62.8
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1629.4 1356 63.3
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1627.5 1323 64.9
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1626.7 1352 63.2
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1625.5 1351 63.3
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1623.6 1388 62.8
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1622.4 1351 63.1
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1617.1 1345 63.0
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1614.7 1354 62.6
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1614.7 1372 63.9
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1613.2 1357 62.7
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1607.0 1346 62.7
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1604.7 1357 62.6
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1601.3 1349 62.2
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1600.5 1365 62.1
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1596.6 1367 61.9
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1592.0 1343 63.5
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1583.2 1290 64.6
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1583.2 1356 61.9
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1582.0 1362 61.3
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1577.8 1361 61.9
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1575.1 1371 60.5
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1562.7 1363 61.6
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1535.4 1340 59.4
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1531.2 1407 59.0
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1529.2 1358 61.6
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1528.8 1381 59.9
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1523.5 1254 62.9
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1506.5 1415 58.4
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1502.6 1345 58.4
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1500.0 1243 63.8
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1498.8 1343 58.0
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1479.2 1346 58.1
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1456.8 1366 57.1
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1444.5 1189 65.1
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1404.8 1332 55.3
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1400.6 1337 54.8
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1400.6 1337 54.8
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1398.6 1345 55.5
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1395.6 1332 55.1
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1393.3 1111 65.4
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1387.1 1331 54.8
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1385.2 1343 54.7
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1315.1 1049 68.0
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1309.3 1277 56.4
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1305.4 937 72.4
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1297.0 1023 68.3
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1269.6 1018 66.9
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1196.0 1478 49.1
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1175.2 1373 47.6
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1171.0 1375 47.4
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1164.8 1018 65.2
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1161.7 844 72.2
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1161.0 1396 50.7
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1151.3 862 70.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 0.0e+00 1150.6 1385 47.7
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1149.0 933 64.3
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1147.5 1014 63.2
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1142.1 863 70.9
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.8e-305 1053.1 873 62.3
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 6.8e-297 1024.6 793 69.5
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 8.9e-281 971.1 670 76.3
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 4.8e-266 922.2 1080 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 4.2e-262 909.1 1065 50.6
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 4.6e-245 852.4 1559 37.8
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.2e-232 811.2 618 68.4
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 3.2e-214 750.0 933 50.2
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.0e-207 728.4 676 58.1
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.1e-201 708.4 758 54.0
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 7.5e-171 605.9 571 59.0
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.3e-164 584.3 559 60.6
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 3.6e-157 560.5 427 70.3
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 2.8e-149 534.3 424 68.9
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 1.5e-147 528.5 428 68.2
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.6e-144 518.5 364 72.0
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.2e-139 502.3 483 53.4
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 2.2e-117 428.3 329 62.9
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.6e-112 412.1 519 46.2
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.0e-111 409.5 329 59.0
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.9e-111 407.5 439 51.3
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 5.7e-110 403.7 339 59.6
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 2.4e-108 398.3 335 59.4
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 4.7e-104 384.0 417 51.6
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 2.0e-99 368.6 316 56.6
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.5e-97 362.5 330 55.2
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.2e-96 359.4 265 71.7
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 4.5e-83 314.3 346 49.4
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 4.5e-83 314.3 225 75.6
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 7.5e-78 297.0 239 58.2
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 5.6e-73 280.8 255 56.1
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.0e-66 260.0 284 54.9
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 9.5e-57 226.9 215 59.1
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.2e-46 193.4 131 64.9
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 2.0e-38 166.0 115 73.9
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 1.5e-33 149.8 216 44.9
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 3.4e-30 138.7 83 86.7
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 6.4e-29 134.4 233 41.6
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 3.2e-28 132.1 120 62.5
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 5.4e-28 131.3 104 63.5
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.6e-22 112.5 86 64.0
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 6.4e-21 107.8 410 23.9
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.3e-18 100.1 60 75.0
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 5.1e-18 98.2 60 73.3
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 5.1e-18 98.2 60 73.3
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 2.5e-17 95.9 60 71.7
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 3.3e-17 95.5 58 72.4
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 7.4e-17 94.4 132 44.7
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 2.0e-14 86.3 74 59.5
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.7e-13 83.2 90 54.4
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.2e-13 82.8 133 41.4
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.5e-12 79.3 89 52.8
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.1e-10 71.6 93 45.2
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 1.9e-09 69.7 62 58.1
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 3.1e-07 62.4 48 68.8
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 5.3e-07 61.6 32 90.6


User provided reference genes

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