Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1496.5 757 100.0
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1483.8 757 98.8
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1290.8 757 85.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 758 83.1
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 757 82.8
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 764 82.5
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 760 82.4
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 757 81.6
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 758 81.7
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 758 82.7
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 757 83.1
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 758 81.7
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 760 81.7
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 811 77.2
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 757 83.5
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 758 81.0
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 758 81.3
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 758 82.1
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1238.8 758 80.7
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1238.4 758 81.4
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1238.0 758 81.8
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 760 82.1
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 755 81.3
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 757 81.1
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1235.3 760 81.2
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 758 80.6
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1232.2 758 80.3
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1231.9 757 81.2
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 717 83.8
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 757 81.6
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 759 81.9
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 758 80.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 762 80.7
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 717 84.1
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 755 81.1
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 758 81.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 759 81.0
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 758 81.8
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 758 80.6
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 761 81.6
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 758 80.6
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 708 84.5
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 758 80.6
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 759 80.4
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 759 81.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 758 81.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 758 80.1
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 708 84.2
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 762 80.4
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 758 81.3
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 759 81.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 757 79.7
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 757 79.4
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 759 79.6
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 758 79.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 793 77.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 758 79.3
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 756 79.5
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 756 80.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 760 80.3
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 758 79.9
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 761 79.4
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 759 81.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 729 82.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 759 80.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 759 78.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 760 80.7
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 758 80.5
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1204.9 759 80.5
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 761 78.6
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 758 79.0
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 728 80.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 720 81.8
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 760 78.6
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 720 81.8
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 757 79.8
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1196.0 758 79.7
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 749 78.4
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 720 81.4
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 757 79.0
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 760 79.6
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 758 78.9
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1193.7 751 79.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1193.3 760 79.6
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1193.3 760 79.6
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 760 79.6
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 759 78.8
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 757 78.9
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 764 79.2
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 758 78.9
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 761 78.8
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 691 83.8
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 759 78.4
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 760 79.3
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 760 79.3
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 757 78.9
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 759 78.0
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1184.5 855 72.4
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1182.5 745 78.9
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1181.0 758 78.4
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 791 75.7
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 760 77.9
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1169.8 753 77.2
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 659 85.7
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1146.0 758 75.7
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1135.6 774 73.6
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1135.2 674 83.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1135.2 757 75.6
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1134.8 757 76.8
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1127.1 659 84.1
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1126.7 659 83.8
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1117.1 758 75.7
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1114.0 1065 58.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1107.8 760 73.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1097.4 659 83.2
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1090.5 759 73.1
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1077.0 628 84.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.9e-297 1025.0 760 70.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.6e-282 976.1 678 68.1
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.4e-280 966.8 684 69.4
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.4e-280 966.8 684 69.4
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.6e-279 964.9 684 69.2
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.1e-279 964.1 684 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.3e-278 962.2 678 68.7
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.2e-277 959.9 676 69.1
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-256 889.8 592 75.7
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 7.5e-253 877.5 592 75.2
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.3e-248 862.1 679 61.6
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.7e-228 796.6 681 58.0
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 9.0e-222 774.2 691 57.6
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.9e-216 756.5 680 62.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.3e-208 729.2 677 55.8
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 8.4e-196 688.0 677 52.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 6.7e-169 598.6 718 46.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.3e-161 573.5 360 77.5
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 5.5e-155 552.4 305 87.5
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.8e-153 547.4 334 84.1
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.2e-136 491.5 311 80.7
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 5.4e-134 482.6 301 81.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 2.3e-124 450.7 309 71.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 8.3e-119 432.2 295 73.6
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.9e-108 396.7 236 81.4
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.2e-96 358.6 219 83.1
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.3e-95 355.1 241 74.7
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.4e-94 351.7 299 64.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.3e-91 340.1 298 63.4
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.2e-85 322.0 233 72.1
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 3.7e-74 283.9 175 78.3
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 8.2e-66 256.1 126 95.2
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-64 251.9 166 74.7
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 9.4e-62 242.7 366 38.5
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.6e-61 241.9 405 43.0
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 4.7e-61 240.4 260 53.1
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 9.7e-59 232.6 114 94.7
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.2e-45 189.1 135 71.1
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 4.0e-44 184.1 150 66.7
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.3e-42 176.8 144 63.2
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.3e-39 169.1 122 70.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 8.5e-39 166.4 102 71.6
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.8e-34 151.4 85 82.4
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.9e-30 138.7 142 50.7
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.2e-30 137.5 138 56.5
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 3.6e-29 134.4 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.8e-28 132.1 105 62.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 1.4e-25 122.5 61 90.2
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 5.4e-25 120.6 75 76.0
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.0e-25 120.2 150 49.3
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.3e-23 115.9 226 30.5
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.3e-23 115.9 99 63.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 3.0e-15 88.2 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 5.0e-15 87.4 50 76.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.2e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 7.5e-11 73.6 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.3e-06 57.0 35 71.4


User provided reference genes

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