Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-178 629.8 333 100.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 3.9e-169 598.2 333 94.6
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 7.8e-162 573.9 333 91.9
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.3e-145 520.0 348 78.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 8.3e-87 324.7 344 53.2
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.1e-86 324.3 333 54.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.5e-85 319.3 344 52.9
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.0e-84 315.5 342 52.9
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.2e-83 312.8 335 52.5
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.6e-82 310.5 337 51.9
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 2.7e-82 309.7 344 50.6
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 4.7e-82 308.9 342 50.9
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.0e-81 307.8 348 50.6
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 1.4e-81 307.4 344 50.9
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.2e-81 305.4 337 51.6
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 5.7e-80 302.0 344 48.5
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 9.8e-80 301.2 345 49.0
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.8e-79 298.9 338 50.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 8.3e-79 298.1 344 48.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-78 297.7 348 48.9
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.4e-78 297.4 341 51.6
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-78 297.4 344 48.3
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 5.4e-78 295.4 344 48.5
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.4e-78 295.4 344 48.3
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.0e-78 295.0 345 48.4
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.1e-78 294.7 345 48.4
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 9.1e-78 294.7 341 48.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.2e-77 294.3 338 49.4
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.6e-77 293.9 354 47.2
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.0e-77 293.5 356 48.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.7e-77 293.1 346 50.9
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 4.5e-77 292.4 334 47.9
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 5.9e-77 292.0 342 48.5
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 5.9e-77 292.0 343 49.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 7.7e-77 291.6 343 49.0
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 7.7e-77 291.6 341 49.6
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.3e-76 290.0 344 47.7
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.3e-76 290.0 330 49.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 2.3e-76 290.0 342 47.4
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.9e-76 289.7 344 48.5
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 5.0e-76 288.9 342 47.4
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 6.6e-76 288.5 250 56.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.6e-76 288.1 342 45.9
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-75 287.3 350 46.6
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.9e-75 287.0 350 46.3
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.3e-75 286.2 344 49.1
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 5.5e-75 285.4 346 49.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 7.2e-75 285.0 343 48.7
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.2e-74 284.3 337 47.8
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.6e-74 282.7 346 48.0
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 4.7e-74 282.3 344 46.2
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 6.1e-74 282.0 344 47.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 6.1e-74 282.0 344 46.8
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 6.1e-74 282.0 346 49.4
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 8.0e-74 281.6 345 47.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.0e-73 281.2 251 55.8
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.4e-73 280.8 343 52.8
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.4e-73 280.8 310 50.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.4e-73 280.8 371 49.1
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 4.0e-73 279.3 249 55.4
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 4.0e-73 279.3 350 47.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.8e-73 278.5 339 46.0
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 6.8e-73 278.5 344 48.8
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 8.9e-73 278.1 344 48.0
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.0e-72 276.9 341 46.9
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 2.6e-72 276.6 347 46.1
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.6e-72 276.6 336 49.4
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 4.4e-72 275.8 344 48.3
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 6.3e-71 271.9 344 45.3
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 8.3e-71 271.6 355 44.2
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.1e-70 271.2 346 48.6
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 7.0e-70 268.5 340 47.6
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.6e-69 267.3 339 44.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.7e-69 266.5 343 44.3
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 4.5e-69 265.8 345 49.3
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 7.8e-69 265.0 242 56.2
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-68 263.8 336 48.5
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.7e-68 263.8 343 47.2
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 5.0e-68 262.3 352 45.5
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.1e-67 261.2 342 45.9
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 3.6e-66 256.1 322 48.8
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 6.1e-66 255.4 343 45.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 4.0e-65 252.7 299 48.2
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 8.9e-65 251.5 316 46.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 3.4e-64 249.6 339 45.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 5.8e-64 248.8 314 47.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.8e-64 248.8 336 43.2
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.7e-63 247.3 300 49.3
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.3e-63 245.0 317 45.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.2e-62 243.0 213 54.5
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.6e-61 240.7 330 46.4
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.7e-60 237.3 372 40.9
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 2.3e-60 236.9 290 49.3
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 5.0e-60 235.7 202 59.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 5.0e-60 235.7 353 43.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.3e-59 232.6 311 45.3
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 7.3e-59 231.9 376 39.9
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.6e-58 230.7 252 49.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 5.2e-57 225.7 305 44.3
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.9e-57 224.9 324 46.0
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 9.8e-56 221.5 244 47.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.7e-55 219.5 255 51.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 4.1e-54 216.1 290 45.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 9.2e-54 214.9 259 45.6
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.0e-52 209.9 219 53.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 5.1e-52 209.1 291 44.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 7.3e-51 205.3 342 38.3
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 6.2e-50 202.2 255 46.7
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.1e-49 201.4 213 51.2
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.1e-49 201.4 213 51.2
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.4e-49 201.1 300 46.3
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 9.9e-48 194.9 218 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.9e-47 193.4 262 42.0
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 8.3e-47 191.8 247 40.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 5.4e-46 189.1 255 40.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.3e-44 184.5 340 38.8
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.5e-43 180.3 285 40.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.8e-41 174.1 220 45.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.2e-41 172.6 246 43.1
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 5.8e-40 169.1 211 46.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.7e-39 167.5 175 53.7
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.3e-36 157.1 128 60.9
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 5.1e-36 156.0 175 48.0
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.3e-34 151.4 216 44.0
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 6.2e-34 149.1 250 35.6
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.8e-33 147.5 264 38.3
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.4e-32 143.3 145 49.0
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.9e-31 139.4 150 50.0
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 9.3e-30 135.2 125 53.6
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.2e-29 134.8 268 33.6
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.2e-29 134.8 166 48.8
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-29 134.0 197 38.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 8.7e-28 128.6 147 45.6
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.1e-26 124.0 169 47.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.3e-25 119.4 196 39.8
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.3e-23 114.8 182 37.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 6.0e-21 105.9 81 60.5
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.9e-19 100.9 60 76.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.1e-18 97.4 148 41.9
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 8.1e-18 95.5 272 26.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 2.1e-10 70.9 213 27.2
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.5e-08 64.7 78 46.2
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.2e-07 60.8 63 49.2
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.4e-06 58.2 58 46.6


User provided reference genes

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