Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4267 Papaver somniferum HOM05D002875 ORTHO05D003215 1.8e-173 612.5 309 100.0
PSO017G1731 Papaver somniferum HOM05D002875 ORTHO05D003215 2.6e-135 485.7 285 87.0
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 7.4e-98 361.3 305 58.4
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 7.4e-90 334.7 307 54.4
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 1.7e-86 323.6 286 54.9
CiPaw.03G055700 Carya illinoinensis HOM05D002875 ORTHO05D003215 8.5e-86 321.2 286 54.9
Nn4g22316 Nelumbo nucifera HOM05D002875 ORTHO05D003215 1.1e-85 320.9 306 52.0
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 7.9e-84 314.7 308 51.3
CSS0013993 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 3.0e-83 312.8 304 51.6
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 6.7e-83 311.6 286 54.9
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 6.7e-83 311.6 304 49.0
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.7e-82 308.5 307 52.4
RcHm_v2.0_Chr2g0175571 Rosa chinensis HOM05D002875 ORTHO05D003215 1.1e-80 304.3 287 53.7
FvH4_6g53530 Fragaria vesca HOM05D002875 ORTHO05D003215 2.4e-80 303.1 299 51.5
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 3.1e-80 302.8 309 48.5
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 4.1e-80 302.4 305 49.5
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 9.1e-80 301.2 310 50.3
CANSAT64G2306 Cannabis sativa HOM05D002875 ORTHO05D003215 1.5e-79 300.4 292 51.0
FAN14G0620 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.5e-79 300.4 299 51.2
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 1.5e-79 300.4 308 49.7
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 5.9e-79 298.5 308 49.4
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 7.7e-79 298.1 285 51.6
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.9e-78 296.2 302 49.3
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 3.8e-78 295.8 322 48.4
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 6.5e-78 295.0 310 49.4
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 6.5e-78 295.0 302 49.7
Rhsim08G0042800 Rhododendron simsii HOM05D002875 ORTHO05D003215 1.9e-77 293.5 285 50.9
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 1.2e-76 290.8 295 48.1
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 2.1e-76 290.0 298 49.0
VMungo1383G3279 Vigna mungo HOM05D002875 ORTHO05D003215 6.1e-76 288.5 298 48.7
MBI07_g16947_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 7.9e-76 288.1 237 59.1
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 1.8e-75 287.0 271 51.7
Glyma.16G056400 Glycine max HOM05D002875 ORTHO05D003215 1.8e-75 287.0 296 48.3
Duzib187G0424 Durio zibethinus HOM05D002875 ORTHO05D003215 3.9e-75 285.8 308 50.0
CSS0041826 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 2.6e-74 283.1 304 48.7
Lalb_Chr14g0363441 Lupinus albus HOM05D002875 ORTHO05D003215 9.7e-74 281.2 309 49.5
Phvul.001G093400 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 1.2e-71 274.2 296 45.3
arahy.Tifrunner.gnm1.ann1.AA3MKH Arachis hypogaea HOM05D002875 ORTHO05D003215 1.3e-70 270.8 291 47.8
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 5.0e-70 268.9 305 46.2
arahy.Tifrunner.gnm1.ann1.E3K3GD Arachis hypogaea HOM05D002875 ORTHO05D003215 2.2e-65 253.4 291 45.7
Dinv25659 Davidia involucrata HOM05D002875 ORTHO05D003215 8.8e-59 231.5 255 47.8
GSVIVG01033092001 Vitis vinifera HOM05D002875 ORTHO05D003215 3.8e-46 189.5 173 49.7
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 6.6e-46 188.7 285 38.9
Nitab4.5_0003229g0110 Nicotiana tabacum HOM05D002875 ORTHO05D003215 1.5e-45 187.6 298 37.2
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 4.3e-45 186.0 281 38.4
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 1.2e-44 184.5 299 36.8
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 1.6e-44 184.1 285 37.9
CAN.G1166.11 Capsicum annuum HOM05D002875 ORTHO05D003215 1.6e-44 184.1 304 37.2
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 1.6e-44 184.1 304 37.2
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 3.6e-44 183.0 265 39.6
Pp3c9_870 Physcomitrium patens HOM05D002875 ORTHO05D003215 6.1e-44 182.2 288 35.1
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 2.3e-43 180.3 265 37.7
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 3.0e-43 179.9 281 38.1
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 3.0e-43 179.9 280 36.1
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 4.0e-43 179.5 281 37.0
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 2.0e-42 177.2 281 36.7
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 2.0e-42 177.2 307 35.5
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 2.6e-42 176.8 295 35.6
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 2.6e-42 176.8 301 37.9
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.4e-42 176.4 281 37.4
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 5.7e-42 175.6 265 38.1
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 7.5e-42 175.3 282 37.2
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 7.5e-42 175.3 282 37.6
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 7.5e-42 175.3 281 37.0
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 9.8e-42 174.9 242 38.4
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 9.8e-42 174.9 281 36.3
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 1.3e-41 174.5 281 34.5
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 2.2e-41 173.7 283 38.5
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 3.7e-41 172.9 281 37.4
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 3.7e-41 172.9 303 33.0
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 4.9e-41 172.6 296 35.1
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 4.9e-41 172.6 281 37.4
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 6.4e-41 172.2 301 32.2
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 1.1e-40 171.4 294 33.7
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 1.1e-40 171.4 283 33.6
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 1.1e-40 171.4 242 38.0
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 1.4e-40 171.0 279 36.6
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.4e-40 170.2 242 37.6
Mapoly0015s0063 Marchantia polymorpha HOM05D002875 ORTHO05D003215 2.4e-40 170.2 268 35.4
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 3.2e-40 169.9 268 37.7
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 3.2e-40 169.9 283 35.7
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 4.1e-40 169.5 301 34.9
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 5.4e-40 169.1 279 34.8
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 9.2e-40 168.3 314 33.8
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 9.2e-40 168.3 277 35.7
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.2e-39 167.9 296 34.8
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.2e-39 167.9 283 35.0
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 1.2e-39 167.9 312 34.6
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 1.6e-39 167.5 281 35.2
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 1.6e-39 167.5 305 34.1
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 1.6e-39 167.5 303 36.0
SMO351G0397 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 1.6e-39 167.5 275 33.8
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 2.0e-39 167.2 301 34.9
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 2.0e-39 167.2 242 37.6
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 2.0e-39 167.2 281 35.6
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 2.0e-39 167.2 303 35.6
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 2.7e-39 166.8 277 37.5
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 3.5e-39 166.4 279 34.4
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 3.5e-39 166.4 247 39.7
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 5.9e-39 165.6 280 35.7
SMO367G0458 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 1.3e-38 164.5 242 34.7
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 1.7e-38 164.1 311 35.4
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.3e-38 163.7 299 33.8
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 3.0e-38 163.3 274 36.5
FAN08G3091 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.9e-38 162.9 297 35.0
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 3.9e-38 162.9 295 36.6
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 3.9e-38 162.9 301 33.2
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.6e-38 162.2 297 35.4
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 8.6e-38 161.8 298 33.6
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 1.1e-37 161.4 297 34.7
QL10p010243 Quercus lobata HOM05D002875 ORTHO05D003215 1.1e-37 161.4 304 32.9
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 1.5e-37 161.0 281 33.8
FAN18G3563 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.9e-37 160.6 297 34.7
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 1.9e-37 160.6 281 35.2
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 1.9e-37 160.6 297 33.3
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 1.9e-37 160.6 306 35.0
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 2.5e-37 160.2 303 34.0
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 2.5e-37 160.2 300 33.7
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 2.5e-37 160.2 279 34.1
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.3e-37 159.8 284 35.2
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 3.3e-37 159.8 281 35.2
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 7.3e-37 158.7 303 33.7
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 7.3e-37 158.7 303 33.7
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 7.3e-37 158.7 304 34.5
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 7.3e-37 158.7 303 32.7
QL10p010118 Quercus lobata HOM05D002875 ORTHO05D003215 9.5e-37 158.3 298 33.2
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 1.2e-36 157.9 245 37.6
Pp3c1_22410 Physcomitrium patens HOM05D002875 ORTHO05D003215 1.6e-36 157.5 306 31.4
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 2.1e-36 157.1 281 32.4
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 2.8e-36 156.8 303 33.0
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 3.6e-36 156.4 303 33.7
Hma1.2p1_0046F.1_g026650 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 3.6e-36 156.4 236 36.0
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 4.7e-36 156.0 303 33.0
QL10p009910 Quercus lobata HOM05D002875 ORTHO05D003215 4.7e-36 156.0 297 33.0
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 4.7e-36 156.0 281 35.6
Ah.11g051480 Amaranthus hybridus HOM05D002875 ORTHO05D003215 6.2e-36 155.6 284 34.5
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 8.0e-36 155.2 303 33.0
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 8.0e-36 155.2 237 37.6
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 1.4e-35 154.5 303 33.3
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-35 154.5 310 34.5
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 1.8e-35 154.1 303 32.7
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 2.3e-35 153.7 293 34.1
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 5.2e-35 152.5 300 31.7
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 6.8e-35 152.1 244 38.1
QL10p010194 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-34 151.4 310 34.2
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 1.5e-34 151.0 304 32.2
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 1.5e-34 151.0 253 34.0
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 1.5e-34 151.0 279 33.0
Actinidia30873 Actinidia chinensis HOM05D002875 ORTHO05D003215 2.6e-34 150.2 139 51.8
QL10p009241 Quercus lobata HOM05D002875 ORTHO05D003215 2.6e-34 150.2 302 34.4
QL10p009307 Quercus lobata HOM05D002875 ORTHO05D003215 2.6e-34 150.2 301 32.6
QL10p008975 Quercus lobata HOM05D002875 ORTHO05D003215 3.4e-34 149.8 304 32.6
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 3.4e-34 149.8 253 33.6
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 4.4e-34 149.4 310 31.3
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-33 147.9 305 34.1
QL10p009146 Quercus lobata HOM05D002875 ORTHO05D003215 6.4e-33 145.6 309 32.4
Cpa.g.sc76.34 Carica papaya HOM05D002875 ORTHO05D003215 3.2e-32 143.3 213 36.6
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 2.0e-31 140.6 304 32.9
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 3.9e-30 136.3 290 33.1
Cpa.g.sc171.14 Carica papaya HOM05D002875 ORTHO05D003215 5.0e-30 136.0 190 39.5
vmacro18345 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 6.6e-30 135.6 124 50.8
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 7.3e-29 132.1 286 30.8
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.2e-28 131.3 98 61.2
SEGI_10049 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 2.8e-28 130.2 123 48.0
FAN18G4336 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.4e-26 123.2 227 34.8
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 7.1e-24 115.5 301 30.2
Atru.chr9.2509 Acer truncatum HOM05D002875 ORTHO05D003215 5.1e-22 109.4 254 31.1
TPR.G14262 Trifolium pratense HOM05D002875 ORTHO05D003215 2.5e-21 107.1 225 29.8
SEGI_02753 Sequoiadendron giganteum HOM05D009476 ORTHO05D014262 7.3e-21 105.5 126 41.3
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 6.8e-19 99.0 131 39.7
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 2.6e-18 97.1 131 39.7
QL10p009356 Quercus lobata HOM05D002875 ORTHO05D003215 1.0e-14 85.1 126 34.9
QL10p010149 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-14 84.7 120 35.0
Lj5A126T83 Lonicera japonica HOM05D002875 ORTHO05D003215 5.1e-14 82.8 132 34.8
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 9.6e-13 78.6 86 46.5
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 4.7e-12 76.3 86 43.0
unitig_26.g9618 Utricularia gibba HOM05D002875 ORTHO05D003215 3.4e-10 70.1 187 30.5
Atru.chr6.2572 Acer truncatum HOM05D002875 ORTHO05D003215 4.9e-09 66.2 53 54.7


User provided reference genes

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