Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.2e-292 1007.7 497 100.0
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.9e-281 971.8 497 97.0
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.6e-198 696.4 510 68.8
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.9e-196 689.5 504 67.3
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.4e-194 683.3 525 67.0
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.9e-192 674.9 506 65.2
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 4.9e-192 674.9 510 65.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.1e-191 672.2 509 66.0
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 5.4e-191 671.4 510 65.7
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 7.0e-191 671.0 496 67.1
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.6e-190 669.8 512 64.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.7e-190 669.1 504 65.1
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.6e-189 664.5 492 65.2
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 9.5e-188 660.6 502 64.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.8e-187 659.1 507 64.5
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.8e-186 656.4 507 63.9
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 4.0e-186 655.2 500 64.8
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.9e-186 654.1 512 63.9
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.6e-185 652.5 508 63.2
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 3.4e-185 652.1 511 64.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.4e-185 651.7 502 63.9
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 4.4e-185 651.7 506 63.6
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 4.4e-185 651.7 456 69.3
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.8e-185 650.6 512 63.7
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.4e-183 646.0 508 64.0
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.2e-183 645.6 506 63.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.1e-183 645.2 506 63.2
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.1e-183 645.2 506 63.2
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 4.1e-183 645.2 506 63.6
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 5.4e-183 644.8 506 63.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 9.2e-183 644.0 503 63.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 9.2e-183 644.0 502 63.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.2e-182 643.7 460 67.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-182 643.7 502 63.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.0e-182 642.9 520 62.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.7e-182 642.5 507 63.9
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.5e-182 642.1 506 63.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.5e-182 642.1 460 67.8
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.0e-181 639.0 504 62.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.9e-181 638.6 565 58.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 5.0e-181 638.3 477 63.9
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 6.6e-181 637.9 508 62.6
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 6.6e-181 637.9 506 62.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.3e-180 635.6 509 62.3
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 3.3e-180 635.6 504 62.7
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 4.3e-180 635.2 502 62.7
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 7.3e-180 634.4 508 62.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 9.5e-180 634.0 530 60.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.2e-179 633.6 508 62.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.6e-179 633.3 497 63.4
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.8e-179 632.5 509 62.1
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.6e-179 632.1 469 65.5
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 4.7e-179 631.7 506 61.7
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.0e-178 630.6 508 61.4
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.4e-178 630.2 456 67.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.0e-178 628.6 511 62.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 4.0e-178 628.6 455 67.3
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 5.2e-178 628.2 467 66.4
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.8e-178 627.9 507 61.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.8e-178 627.9 509 61.5
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 8.9e-178 627.5 456 67.1
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.2e-177 627.1 507 60.2
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 4.4e-177 625.2 503 61.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 4.4e-177 625.2 593 56.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 9.8e-177 624.0 509 60.7
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.2e-176 622.9 505 62.6
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.2e-176 622.9 483 65.2
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 3.7e-176 622.1 506 60.1
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 6.4e-176 621.3 479 64.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 6.4e-176 621.3 506 60.7
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.4e-175 620.2 503 63.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.4e-175 619.4 509 60.7
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.1e-175 618.6 505 60.8
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 7.0e-175 617.8 492 66.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.6e-174 616.7 509 61.3
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.5e-174 615.5 506 60.1
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.0e-173 614.0 504 59.3
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.3e-173 613.6 475 64.0
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.0e-173 612.5 475 62.9
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 3.9e-173 612.1 509 62.7
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 3.9e-173 612.1 510 61.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.9e-172 609.8 442 67.9
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-172 608.2 507 60.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-172 608.2 507 60.6
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 5.6e-172 608.2 515 61.0
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.2e-171 607.1 468 64.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.3e-170 602.8 458 65.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.8e-169 597.4 454 64.8
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 8.3e-168 594.3 557 55.8
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.2e-167 592.4 463 62.4
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 4.1e-167 592.0 467 62.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 5.4e-167 591.7 469 62.3
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.5e-164 583.6 502 60.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.9e-164 583.2 434 63.8
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-163 578.6 435 64.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.7e-163 578.6 457 63.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 8.9e-162 574.3 433 65.6
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.7e-160 570.1 503 58.1
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 3.7e-160 568.9 464 58.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 8.4e-160 567.8 501 58.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-159 566.6 515 56.3
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.0e-153 546.6 444 59.9
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 3.8e-152 542.3 424 62.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.1e-151 540.8 462 58.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 6.4e-144 515.0 355 70.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.4e-137 492.7 506 51.8
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 5.8e-137 491.9 379 66.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.4e-135 486.5 367 64.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-132 476.1 411 58.4
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.0e-129 466.8 446 53.8
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 6.0e-126 455.3 387 59.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 5.5e-119 432.2 492 46.3
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 7.9e-118 428.3 457 49.9
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 6.5e-112 408.7 439 49.0
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.4e-106 390.2 505 44.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-104 383.3 360 54.2
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-103 380.2 387 53.2
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.1e-90 336.7 277 59.2
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-88 330.1 320 54.7
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.9e-80 303.5 506 37.9
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 9.5e-71 271.9 462 36.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 6.1e-70 269.2 395 43.3
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 7.5e-68 262.3 225 58.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.9e-67 260.4 434 39.4
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.0e-61 241.9 361 39.6
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.5e-60 238.0 221 55.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 9.5e-55 218.8 486 33.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-45 188.3 155 63.9
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.1e-41 174.5 248 41.5
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 3.6e-38 163.7 208 41.3
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.3e-34 149.1 100 70.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 6.9e-29 132.9 90 71.1
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.4e-28 130.6 331 28.1
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 3.9e-24 117.1 134 50.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.5e-17 94.0 106 51.9
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-12 79.0 64 64.1
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 7.6e-12 76.3 49 77.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 4.9e-11 73.6 48 64.6
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 2.7e-09 67.8 409 23.2
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 5.1e-08 63.5 65 56.9
HanXRQChr09g0238391 Helianthus annuus HOM05D000686 ORTHO05D000512 8.7e-08 62.8 402 21.6
PSO761G0599 Papaver somniferum HOM05D000686 ORTHO05D000512 1.6e-06 58.5 217 26.3
HanXRQChr12g0369191 Helianthus annuus HOM05D000686 ORTHO05D000512 3.7e-06 57.4 242 26.0


User provided reference genes

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