Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.2e-115 419.9 210 100.0
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 3.3e-110 401.7 210 95.7
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.9e-49 199.9 201 55.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 4.3e-49 198.7 190 57.9
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.6e-49 198.4 217 54.4
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.1e-47 192.6 193 57.0
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-46 190.3 204 54.4
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 7.6e-46 188.0 190 53.7
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 9.9e-46 187.6 194 55.7
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.9e-46 187.6 198 55.6
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-45 187.2 201 51.7
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.7e-45 186.8 192 54.2
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.7e-45 186.8 203 54.2
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.9e-45 186.0 215 51.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.8e-45 185.7 202 53.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.1e-44 184.1 192 52.6
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-44 184.1 192 51.0
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.9e-44 183.3 192 52.6
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-44 183.3 204 52.9
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.9e-44 183.3 202 54.0
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.2e-44 182.6 203 50.7
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 4.2e-44 182.2 197 53.3
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.4e-44 181.8 216 49.1
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 9.3e-44 181.0 188 53.7
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.2e-43 180.6 195 53.8
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-43 180.6 202 51.5
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.6e-43 180.3 197 52.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.7e-43 179.5 139 65.5
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 4.6e-43 178.7 215 50.2
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.0e-43 178.3 189 52.4
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 7.9e-43 177.9 198 52.5
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.9e-43 177.9 186 54.8
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.0e-42 177.6 184 53.8
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.8e-42 176.8 192 53.6
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.8e-42 176.8 192 53.6
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 3.9e-42 175.6 193 51.3
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-42 175.3 193 52.3
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 5.1e-42 175.3 189 53.4
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.1e-42 175.3 202 51.5
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 6.7e-42 174.9 224 46.0
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 6.7e-42 174.9 200 50.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.7e-42 174.9 193 51.3
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 8.7e-42 174.5 195 51.3
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.1e-41 174.1 192 50.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.5e-41 173.7 206 49.0
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.9e-41 173.3 199 49.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.9e-41 173.3 193 50.8
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.5e-41 172.9 203 51.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-41 172.9 140 63.6
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 3.3e-41 172.6 204 50.5
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.3e-41 172.6 188 52.1
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 3.3e-41 172.6 192 51.6
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.3e-41 172.6 215 47.0
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.3e-41 172.2 203 49.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 5.6e-41 171.8 190 51.1
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 5.6e-41 171.8 199 49.2
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 9.6e-41 171.0 192 52.6
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 9.6e-41 171.0 202 50.0
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 9.6e-41 171.0 222 47.3
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-40 170.6 150 59.3
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-40 170.6 206 48.1
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.6e-40 170.2 206 51.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.6e-40 170.2 185 51.4
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.7e-40 169.1 201 51.2
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.8e-40 168.7 197 52.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.2e-40 168.3 192 51.0
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 8.1e-40 167.9 212 47.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 8.1e-40 167.9 154 56.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.1e-39 167.5 198 48.0
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.8e-39 166.8 229 45.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.8e-39 166.8 155 55.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.8e-39 166.8 154 56.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.8e-39 166.8 202 49.0
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.8e-39 166.8 197 50.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.4e-39 166.4 208 48.6
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-39 166.4 198 51.5
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.1e-39 166.0 199 50.3
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.1e-39 166.0 198 51.5
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 5.3e-39 165.2 190 50.0
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 5.3e-39 165.2 200 49.5
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 6.9e-39 164.9 237 44.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 6.9e-39 164.9 202 48.5
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 9.0e-39 164.5 193 49.7
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 9.0e-39 164.5 214 44.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.2e-38 164.1 173 52.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.5e-38 163.7 202 49.5
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 2.0e-38 163.3 193 50.8
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.6e-38 162.9 220 45.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 3.4e-38 162.5 126 63.5
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 5.8e-38 161.8 203 46.8
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 5.8e-38 161.8 198 47.0
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 7.6e-38 161.4 189 50.3
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.0e-37 161.0 216 46.3
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.3e-37 160.6 202 47.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.7e-37 160.2 198 48.0
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.7e-37 160.2 143 58.7
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 2.2e-37 159.8 207 45.9
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-37 159.8 193 45.6
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.9e-37 159.5 191 49.2
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.9e-37 159.5 191 49.2
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 3.8e-37 159.1 196 47.4
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 4.9e-37 158.7 203 50.2
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 6.5e-37 158.3 230 44.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 8.4e-37 157.9 216 44.4
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.1e-36 157.5 191 49.7
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-36 157.1 186 50.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.2e-36 156.0 208 46.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 3.2e-36 156.0 109 70.6
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 4.6e-35 152.1 191 48.7
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.3e-34 150.6 184 46.2
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.8e-34 150.2 138 57.2
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.8e-34 150.2 191 48.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.8e-34 150.2 161 49.7
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.8e-34 150.2 107 69.2
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-34 150.2 199 46.2
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.9e-34 149.1 143 55.9
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 6.7e-34 148.3 183 45.9
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 6.7e-34 148.3 186 48.9
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.5e-33 146.4 192 47.4
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.5e-33 146.4 152 50.7
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 4.3e-33 145.6 128 60.2
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 4.3e-33 145.6 213 44.6
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 5.7e-33 145.2 132 58.3
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 5.7e-33 145.2 132 58.3
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 9.6e-33 144.4 197 45.2
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 9.6e-33 144.4 168 51.2
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.3e-32 144.1 120 60.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.3e-32 144.1 102 68.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.6e-32 143.7 132 57.6
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.6e-32 143.7 100 68.0
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.1e-32 143.3 198 43.4
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.8e-32 142.9 103 68.0
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.8e-32 142.9 201 42.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.7e-32 142.5 137 55.5
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.7e-32 142.5 117 58.1
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.8e-32 142.1 197 42.1
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 8.2e-32 141.4 188 47.3
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 8.2e-32 141.4 204 44.6
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.4e-31 139.8 195 45.6
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.4e-31 139.8 201 44.8
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.3e-31 138.7 115 60.9
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.5e-30 137.1 129 55.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.6e-30 136.3 137 53.3
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.5e-30 135.6 102 63.7
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.3e-29 134.0 102 64.7
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.3e-29 134.0 106 62.3
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.7e-29 133.7 279 35.8
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 3.8e-29 132.5 124 56.5
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.4e-28 130.6 107 56.1
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.5e-28 128.6 109 58.7
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.0e-26 124.4 91 65.9
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.0e-26 124.4 91 65.9
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.0e-26 124.4 84 69.0
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.8e-26 123.6 195 39.5
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.7e-24 115.9 82 65.9
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.5e-22 109.0 69 69.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.1e-20 104.4 158 44.3
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.1e-17 94.4 91 56.0
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 3.7e-16 89.4 86 47.7
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 8.2e-16 88.2 63 68.3
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 4.1e-15 85.9 129 41.1
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.1e-11 72.0 76 44.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.3e-10 70.1 206 30.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.5e-09 67.4 84 42.9
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 5.7e-09 65.5 47 63.8
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 5.3e-07 58.9 41 65.9
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 9.1e-07 58.2 44 59.1


User provided reference genes

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