Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.7e-66 255.8 123 100.0
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.1e-66 254.2 123 98.4
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 7.8e-59 230.3 126 88.1
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 85.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.1e-57 226.5 126 84.9
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.1e-57 226.5 126 84.1
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.9e-57 225.7 126 84.9
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.3e-57 224.9 127 87.4
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 4.3e-57 224.6 126 84.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.3e-57 224.6 126 85.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 5.6e-57 224.2 126 85.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 7.3e-57 223.8 125 85.6
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 9.6e-57 223.4 126 86.5
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 9.6e-57 223.4 126 84.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.2e-56 223.0 126 82.5
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.2e-56 223.0 125 84.8
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.2e-56 223.0 125 84.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.6e-56 222.6 126 84.1
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.6e-56 222.6 126 84.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.6e-56 222.6 126 82.5
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.1e-56 222.2 126 84.1
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.1e-56 222.2 126 84.9
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 3.6e-56 221.5 126 83.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 3.6e-56 221.5 126 82.5
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 6.2e-56 220.7 126 83.3
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 6.2e-56 220.7 126 83.3
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 8.1e-56 220.3 126 83.3
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 8.1e-56 220.3 126 83.3
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 8.1e-56 220.3 126 82.5
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 8.1e-56 220.3 126 83.3
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 8.1e-56 220.3 126 82.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 83.3
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 82.5
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 82.5
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.1e-55 219.9 125 84.0
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 83.3
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.1e-55 219.9 127 85.0
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 82.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 83.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-55 219.5 124 83.1
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 83.3
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 82.5
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 83.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-55 218.8 126 81.7
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-55 218.8 126 82.5
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 81.7
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 81.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 83.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 83.3
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 83.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 2.4e-55 218.8 125 83.2
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 3.1e-55 218.4 126 82.5
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 3.1e-55 218.4 126 82.5
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 3.1e-55 218.4 125 84.0
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.1e-55 218.4 125 82.4
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 4.0e-55 218.0 126 81.7
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 4.0e-55 218.0 126 81.7
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 4.0e-55 218.0 126 81.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 4.0e-55 218.0 126 83.3
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 84.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 82.5
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 84.1
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 81.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 83.3
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 83.3
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 83.3
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 5.2e-55 217.6 126 83.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 5.2e-55 217.6 126 83.3
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 6.9e-55 217.2 126 81.7
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 83.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.5e-54 216.1 126 83.3
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 81.0
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 3.4e-54 214.9 124 81.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.4e-54 214.9 126 82.5
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 3.4e-54 214.9 126 81.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 3.4e-54 214.9 126 81.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 4.4e-54 214.5 126 81.7
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 4.4e-54 214.5 114 85.1
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 4.4e-54 214.5 126 81.7
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.8e-54 214.2 124 81.5
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 7.6e-54 213.8 126 80.2
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 7.6e-54 213.8 126 80.2
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 9.9e-54 213.4 126 81.0
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 9.9e-54 213.4 126 81.7
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.3e-53 213.0 140 75.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.2e-53 212.2 126 80.2
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.2e-53 212.2 127 82.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 2.2e-53 212.2 126 81.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 2.9e-53 211.8 127 81.1
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.9e-53 211.8 126 81.0
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.9e-53 211.8 126 81.0
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.4e-53 210.3 125 80.0
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.1e-52 209.9 127 80.3
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.9e-52 209.1 125 80.0
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 7.1e-52 207.2 126 78.6
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.2e-51 206.5 126 79.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.1e-51 205.7 126 80.2
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 6.0e-51 204.1 126 80.2
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 7.8e-51 203.8 126 77.0
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.0e-50 203.4 126 79.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 77.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 6.6e-50 200.7 126 73.8
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 8.7e-50 200.3 126 75.4
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-49 199.9 126 75.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 3.6e-48 194.9 112 82.1
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.8e-47 192.6 124 74.2
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 6.9e-47 190.7 126 70.6
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 4.5e-46 188.0 107 85.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.3e-45 186.4 94 89.4
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.3e-45 186.4 107 84.1
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.2e-45 185.7 93 89.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.2e-45 185.7 107 84.1
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 3.8e-45 184.9 126 71.4
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 6.4e-45 184.1 107 83.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.1e-44 183.3 94 88.3
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.4e-44 182.2 107 84.1
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 4.2e-44 181.4 101 84.2
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 4.2e-44 181.4 107 82.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 7.1e-44 180.6 112 78.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 7.1e-44 180.6 107 81.3
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 9.3e-44 180.3 112 78.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 3.5e-43 178.3 107 81.3
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 6.0e-43 177.6 107 80.4
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.8e-42 176.0 107 77.6
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.9e-42 174.9 107 79.4
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.1e-42 174.5 101 78.2
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.9e-41 172.6 112 76.8
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.1e-39 166.8 122 65.6
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 5.8e-38 161.0 139 61.9
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.6e-35 151.4 126 61.9
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 1.1e-33 146.7 126 63.5
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.6e-33 144.4 118 61.0
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 7.4e-33 144.1 102 61.8
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 9.6e-33 143.7 75 85.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.1e-31 138.7 141 53.2
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 4.0e-31 138.3 128 54.7
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.3e-26 123.2 79 75.9
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 8.7e-26 120.6 75 78.7
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.3e-25 118.6 126 52.4
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 7.4e-25 117.5 79 68.4
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.3e-24 114.4 86 68.6
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.1e-23 113.6 105 52.4
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-22 110.2 86 65.1
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 2.0e-22 109.4 93 61.3
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-22 109.0 66 75.8
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 7.6e-22 107.5 65 75.4
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.0e-21 107.1 88 67.0
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 6.5e-21 104.4 68 67.6
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.6e-19 99.8 103 49.5
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 5.1e-18 94.7 72 66.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 6.7e-18 94.4 78 56.4
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 3.3e-17 92.0 91 54.9
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 2.8e-16 89.0 65 66.2
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.5e-14 81.6 43 86.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.0e-06 56.2 45 64.4


User provided reference genes

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