Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 1.1e-151 540.0 292 100.0
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 2.8e-139 498.8 292 91.1
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 2.6e-121 439.1 292 83.2
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 7.2e-119 431.0 290 81.4
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 8.8e-117 424.1 290 82.1
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.6e-102 376.7 290 69.3
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 1.5e-100 370.2 288 67.4
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 3.3e-100 369.0 285 70.9
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 4.4e-100 368.6 292 67.8
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 5.7e-100 368.2 290 69.0
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 9.7e-100 367.5 291 70.1
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 1.3e-99 367.1 286 69.6
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 2.2e-99 366.3 285 68.1
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 4.8e-99 365.2 303 65.0
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.8e-99 365.2 287 68.3
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 6.3e-99 364.8 292 68.5
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 6.3e-99 364.8 297 67.3
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 8.2e-99 364.4 298 67.1
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 1.1e-98 364.0 287 67.9
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 1.4e-98 363.6 307 65.1
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 2.4e-98 362.8 289 67.5
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 4.1e-98 362.1 304 64.1
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 5.3e-98 361.7 296 64.9
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 5.3e-98 361.7 294 66.0
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 7.0e-98 361.3 287 66.9
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 9.1e-98 360.9 303 64.4
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.6e-97 360.1 287 66.9
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 2.7e-97 359.4 290 66.6
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 4.5e-97 358.6 296 64.5
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 7.7e-97 357.8 291 66.0
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 1.0e-96 357.5 282 66.3
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 1.0e-96 357.5 290 66.9
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 2.9e-96 355.9 298 64.4
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 2.9e-96 355.9 292 65.8
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 5.0e-96 355.1 292 65.8
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 6.5e-96 354.8 281 66.9
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 6.5e-96 354.8 305 63.6
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 6.5e-96 354.8 289 65.4
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 8.5e-96 354.4 303 62.7
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 1.9e-95 353.2 289 65.1
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.9e-95 353.2 281 66.5
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 2.5e-95 352.8 284 67.3
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 2.5e-95 352.8 319 59.9
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 3.2e-95 352.4 290 66.2
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 3.2e-95 352.4 290 65.9
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 5.5e-95 351.7 292 64.0
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 9.4e-95 350.9 295 65.1
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 1.2e-94 350.5 297 63.0
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.2e-94 350.5 301 62.8
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 1.6e-94 350.1 278 66.5
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 2.7e-94 349.4 298 63.1
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 2.7e-94 349.4 300 63.7
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 4.7e-94 348.6 286 65.0
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 1.4e-93 347.1 298 62.8
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.4e-93 347.1 289 64.7
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.4e-93 347.1 293 63.5
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.8e-93 346.7 286 64.7
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 3.0e-93 345.9 290 64.1
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 3.0e-93 345.9 289 65.4
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 4.0e-93 345.5 289 63.3
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 4.0e-93 345.5 289 65.7
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.2e-92 344.0 282 64.5
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.5e-92 343.6 296 63.5
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 2.6e-92 342.8 297 62.0
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 3.4e-92 342.4 278 64.7
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 4.4e-92 342.0 296 62.2
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 4.4e-92 342.0 279 65.6
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 5.7e-92 341.7 297 62.0
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 5.7e-92 341.7 297 62.0
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 5.7e-92 341.7 297 62.0
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 7.5e-92 341.3 290 64.5
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 7.5e-92 341.3 297 62.0
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 7.5e-92 341.3 278 64.4
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 9.8e-92 340.9 296 63.2
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 9.8e-92 340.9 286 62.6
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 9.8e-92 340.9 290 62.8
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 1.3e-91 340.5 292 63.0
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 1.3e-91 340.5 281 64.4
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.3e-91 340.5 290 60.7
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.7e-91 340.1 281 64.4
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 2.2e-91 339.7 297 61.6
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 2.8e-91 339.3 286 64.0
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 2.8e-91 339.3 285 63.5
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 3.7e-91 339.0 292 64.0
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 4.8e-91 338.6 292 64.7
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 4.8e-91 338.6 284 64.4
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 4.8e-91 338.6 297 61.3
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 1.1e-90 337.4 297 60.6
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 1.1e-90 337.4 282 64.9
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.8e-90 336.7 296 62.2
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 3.1e-90 335.9 297 60.6
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 3.1e-90 335.9 284 64.8
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 5.4e-90 335.1 283 62.2
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 1.2e-89 334.0 296 61.1
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 5.9e-89 331.6 286 60.5
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 5.9e-89 331.6 286 63.6
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 7.7e-89 331.3 302 60.6
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 2.2e-88 329.7 297 59.9
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 2.9e-88 329.3 297 59.6
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 6.5e-88 328.2 297 59.3
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 1.5e-87 327.0 297 59.3
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 1.5e-87 327.0 297 62.3
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 2.5e-87 326.2 291 60.1
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 4.2e-87 325.5 292 63.4
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.6e-86 322.4 293 60.4
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 3.0e-85 319.3 310 59.4
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.2e-84 317.4 285 57.2
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 1.5e-84 317.0 293 56.7
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 4.4e-84 315.5 290 60.3
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 1.3e-83 313.9 312 58.3
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 1.7e-83 313.5 297 59.6
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 1.7e-83 313.5 257 65.0
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 1.2e-81 307.4 312 55.8
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 4.5e-81 305.4 277 58.5
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 4.5e-81 305.4 233 70.4
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 5.0e-80 302.0 302 57.6
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 1.6e-78 297.0 269 56.5
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.1e-78 296.6 232 68.1
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 2.8e-78 296.2 285 56.8
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 8.0e-78 294.7 235 65.1
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 1.4e-77 293.9 240 65.8
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 3.0e-77 292.7 272 61.8
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 4.0e-77 292.4 284 54.9
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 4.9e-75 285.4 232 63.8
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 4.9e-75 285.4 250 62.0
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 3.5e-73 279.3 292 54.1
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 3.2e-66 256.1 306 50.7
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.9e-63 246.9 268 50.7
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 1.2e-62 244.2 274 49.3
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 2.3e-61 240.0 249 53.4
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 6.8e-61 238.4 205 65.4
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 2.0e-60 236.9 270 47.0
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 5.8e-60 235.3 194 67.5
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 9.5e-55 218.0 197 59.4
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 5.8e-52 208.8 305 43.3
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 1.9e-50 203.8 218 56.0
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.5e-41 172.9 124 68.5
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 3.2e-34 149.8 125 61.6
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 9.0e-29 131.7 271 30.6
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 9.9e-28 128.3 268 30.2
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 1.3e-27 127.9 86 80.2
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 1.3e-22 111.3 95 57.9
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 5.7e-15 85.9 290 24.8
Cfa025659 Carpinus fangiana HOM05D005038 ORTHO05D006055 4.5e-12 76.3 286 24.5
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 5.9e-12 75.9 209 25.8
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.5e-07 61.2 42 64.3
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 5.7e-07 59.3 206 24.8
MSTRG.23328 Avicennia marina HOM05D002673 ORTHO05D002766 7.4e-07 58.9 200 23.0
CANSAT01G0620 Cannabis sativa HOM05D002673 ORTHO05D002766 9.7e-07 58.5 205 23.4
BcaC03g13290 Brassica carinata HOM05D002673 ORTHO05D002766 1.3e-06 58.2 215 23.7
BolC2t06385H Brassica oleracea HOM05D002673 ORTHO05D002766 1.6e-06 57.8 215 23.7
Cre17.g702750 Chlamydomonas reinhardtii HOM05D003236 ORTHO05D003620 1.6e-06 57.8 83 32.5
unitig_747.g21750 Utricularia gibba HOM05D002673 ORTHO05D002766 2.8e-06 57.0 221 23.1
C02p04220 Brassica napus HOM05D002673 ORTHO05D002766 3.7e-06 56.6 215 23.3


User provided reference genes

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