Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-96 355.5 178 100.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 3.3e-82 308.5 181 88.4
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.1e-52 209.5 172 67.4
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.7e-52 209.1 169 68.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.1e-41 172.9 183 53.0
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 8.4e-38 161.0 183 49.7
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 7.9e-36 154.5 185 47.0
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.3e-35 153.7 164 50.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 3.9e-35 152.1 164 50.6
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 6.7e-35 151.4 161 52.8
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 3.3e-34 149.1 179 49.7
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.3e-34 148.7 160 50.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 4.3e-34 148.7 175 51.4
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 7.4e-34 147.9 177 47.5
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 7.4e-34 147.9 158 50.6
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 9.7e-34 147.5 179 46.4
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.6e-33 146.7 167 49.1
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.8e-33 146.0 177 46.9
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.8e-32 143.3 182 45.6
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.4e-32 142.9 160 46.9
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 4.1e-32 142.1 160 46.9
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 9.0e-32 141.0 176 45.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 9.0e-32 141.0 166 46.4
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 2.0e-31 139.8 169 47.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 3.4e-31 139.0 141 53.2
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 4.5e-31 138.7 166 47.6
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.9e-31 138.3 178 44.4
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.3e-30 137.1 169 46.7
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.7e-30 136.7 165 47.9
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 3.8e-30 135.6 171 45.6
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.1e-29 134.0 178 44.9
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.4e-29 133.7 170 45.3
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 1.4e-29 133.7 164 45.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.9e-29 133.3 175 44.0
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.5e-29 132.9 172 44.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.5e-29 132.9 179 44.7
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 3.2e-29 132.5 182 46.2
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 5.5e-29 131.7 164 44.5
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 5.5e-29 131.7 129 55.0
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 5.5e-29 131.7 175 44.0
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 7.2e-29 131.3 159 44.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 9.3e-29 131.0 171 45.6
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.2e-28 130.6 161 49.1
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.1e-28 129.8 170 44.7
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.1e-28 129.8 170 45.9
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.1e-28 129.8 179 42.5
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 2.7e-28 129.4 170 43.5
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.6e-28 129.0 141 50.4
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.6e-28 128.6 170 44.7
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.6e-28 128.6 170 44.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.6e-28 128.6 178 41.0
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 4.6e-28 128.6 173 46.8
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 6.1e-28 128.3 161 42.9
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 6.1e-28 128.3 178 46.1
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 6.1e-28 128.3 140 51.4
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 7.9e-28 127.9 185 40.5
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 7.9e-28 127.9 179 46.9
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 7.9e-28 127.9 159 42.8
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.0e-27 127.5 170 42.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.0e-27 127.5 172 44.8
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 1.8e-27 126.7 171 42.7
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.8e-27 126.7 179 46.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.3e-27 126.3 172 44.2
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 3.0e-27 125.9 172 44.2
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 3.9e-27 125.6 179 42.5
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.9e-27 125.6 176 43.8
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.9e-27 125.6 166 45.8
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.1e-27 125.2 165 44.2
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 6.7e-27 124.8 168 43.5
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.7e-27 124.8 142 46.5
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 8.8e-27 124.4 172 42.4
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.1e-26 124.0 130 50.8
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.5e-26 123.6 165 44.2
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.5e-26 123.6 176 42.0
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-26 123.2 177 39.5
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.9e-26 123.2 177 40.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.9e-26 123.2 172 42.4
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.5e-26 122.9 170 43.5
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.3e-26 122.5 137 48.2
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.3e-26 122.1 173 42.2
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 5.7e-26 121.7 168 42.9
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 5.7e-26 121.7 178 44.4
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 9.7e-26 120.9 161 41.6
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.3e-25 120.6 168 42.3
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.3e-25 120.6 183 39.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.7e-25 120.2 163 42.9
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.8e-25 119.4 159 44.0
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.7e-25 119.0 171 41.5
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 3.7e-25 119.0 165 41.2
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.8e-25 118.6 142 48.6
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 4.8e-25 118.6 159 44.0
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.8e-25 118.6 165 43.0
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 8.2e-25 117.9 142 48.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 8.2e-25 117.9 171 43.9
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 8.2e-25 117.9 175 41.7
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 8.2e-25 117.9 140 47.9
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.4e-24 117.1 141 48.2
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.5e-23 113.6 165 42.4
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 2.0e-23 113.2 164 39.0
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 2.6e-23 112.8 170 40.0
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 4.5e-23 112.1 166 40.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 7.7e-23 111.3 122 45.9
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 7.7e-23 111.3 133 45.9
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.3e-22 110.5 157 42.0
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 2.9e-22 109.4 146 45.2
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 3.8e-22 109.0 121 45.5
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 5.0e-22 108.6 164 40.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 5.0e-22 108.6 167 39.5
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 6.5e-22 108.2 149 40.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.5e-22 108.2 177 40.1
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 8.5e-22 107.8 164 40.9
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 8.5e-22 107.8 163 41.1
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 8.5e-22 107.8 133 45.1
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.1e-21 107.5 161 41.0
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.1e-21 107.5 149 40.3
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.9e-21 106.7 158 42.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.5e-21 106.3 164 42.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 5.5e-21 105.1 169 42.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.6e-20 103.6 125 43.2
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.7e-20 102.8 125 46.4
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 3.6e-20 102.4 132 43.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.7e-20 102.1 119 46.2
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.0e-19 100.9 128 43.8
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.8e-19 100.1 169 40.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 3.0e-19 99.4 263 31.9
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 8.8e-19 97.8 138 41.3
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 8.8e-19 97.8 178 36.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.1e-18 97.4 156 36.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.5e-18 97.1 145 37.9
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 3.3e-18 95.9 103 47.6
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 3.3e-18 95.9 86 53.5
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 5.7e-18 95.1 155 37.4
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 7.4e-18 94.7 155 37.4
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 9.7e-18 94.4 140 41.4
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 6.3e-17 91.7 134 38.1
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.4e-16 89.7 128 44.5
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 5.9e-15 85.1 187 36.4
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 5.9e-15 85.1 147 36.1
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.3e-14 84.0 163 36.2
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.2e-14 83.2 118 37.3
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 5.5e-13 78.6 177 31.6
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.1e-12 76.6 131 34.4
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 6.1e-12 75.1 82 48.8
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 1.0e-11 74.3 91 41.8
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.8e-11 73.6 82 45.1
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.0e-10 70.1 82 45.1
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.0e-10 70.1 81 44.4
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 2.8e-09 66.2 78 42.3
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.8e-08 63.5 75 49.3
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 3.1e-08 62.8 117 31.6
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 4.1e-08 62.4 92 42.4
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 9.1e-08 61.2 117 31.6
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.6e-07 59.7 79 41.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.0e-06 57.8 113 31.0
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.2e-06 56.6 102 31.4
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 2.2e-06 56.6 62 38.7
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 2.2e-06 56.6 99 36.4


User provided reference genes

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