Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 1.0e-243 846.3 423 100.0
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.2e-223 779.6 421 92.4
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 5.0e-129 465.3 414 57.5
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 7.2e-128 461.5 416 57.5
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 7.0e-123 444.9 424 54.2
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 5.2e-118 428.7 431 52.7
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.7e-116 423.7 422 51.4
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.8e-116 422.2 423 52.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.8e-115 420.2 400 53.0
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 4.1e-115 419.1 432 50.5
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 5.3e-115 418.7 412 51.9
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 1.2e-114 417.5 430 51.6
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.6e-114 417.2 403 54.8
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.6e-114 416.4 419 50.6
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.3e-113 414.1 430 51.4
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.9e-112 410.2 431 50.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 7.2e-112 408.3 429 50.1
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.2e-111 407.5 406 51.7
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 4.7e-111 405.6 433 50.6
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 6.1e-111 405.2 421 50.4
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.0e-110 404.4 405 52.1
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 4.0e-110 402.5 432 48.1
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 4.0e-110 402.5 405 49.6
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.0e-109 400.2 419 49.4
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.0e-109 400.2 403 50.6
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.3e-109 399.4 431 49.0
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 4.4e-109 399.1 410 49.0
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 5.7e-109 398.7 419 48.7
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 7.5e-109 398.3 403 50.1
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 1.3e-108 397.5 420 50.2
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-108 397.1 404 50.2
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 2.2e-108 396.7 397 52.9
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.7e-108 396.0 422 50.5
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.4e-107 394.0 405 50.1
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.8e-107 393.7 402 51.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.8e-107 393.7 419 48.9
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.1e-107 392.5 419 48.7
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.0e-106 390.2 407 49.1
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 3.5e-106 389.4 404 48.5
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 4.5e-106 389.0 404 49.0
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 1.0e-105 387.9 409 48.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 2.2e-105 386.7 404 49.3
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.9e-105 386.3 422 49.5
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.5e-104 384.0 422 49.3
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.6e-103 380.6 422 49.3
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-103 380.6 394 51.0
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 6.1e-103 378.6 421 47.5
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 6.1e-103 378.6 380 51.6
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.0e-102 377.9 380 51.6
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.8e-102 377.1 404 50.0
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 6.8e-102 375.2 380 49.7
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 3.4e-101 372.9 419 46.5
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 5.7e-101 372.1 403 49.6
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 9.8e-101 371.3 380 50.0
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 2.8e-100 369.8 380 50.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 6.3e-100 368.6 375 49.3
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 6.3e-100 368.6 386 51.0
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.1e-99 367.9 421 47.5
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 2.4e-99 366.7 423 46.6
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 7.0e-99 365.2 377 50.1
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 3.5e-98 362.8 398 49.5
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 5.9e-98 362.1 373 49.1
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.0e-97 361.3 381 49.3
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 2.3e-97 360.1 403 49.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.9e-97 359.8 377 49.6
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 5.0e-97 359.0 365 50.1
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 6.6e-97 358.6 431 45.7
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 7.2e-96 355.1 381 48.8
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.0e-94 351.3 415 43.6
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 4.0e-94 349.4 403 46.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 5.2e-94 349.0 388 48.2
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 8.9e-94 348.2 394 48.2
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.2e-93 347.8 360 48.1
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 7.5e-93 345.1 403 45.4
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 2.8e-92 343.2 419 45.6
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.7e-92 342.8 380 47.9
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.7e-92 342.8 358 49.4
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-90 337.4 356 49.2
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 2.0e-90 337.0 401 45.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.0e-90 337.0 405 45.7
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 4.5e-90 335.9 401 45.6
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 7.8e-90 335.1 403 45.9
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.3e-89 334.3 405 46.7
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.3e-89 333.6 376 47.1
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 3.8e-89 332.8 405 46.2
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 6.6e-89 332.0 428 44.4
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 5.6e-88 328.9 402 45.0
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 7.3e-88 328.6 406 44.6
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 9.5e-88 328.2 383 48.0
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 1.2e-87 327.8 378 46.6
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 2.8e-87 326.6 382 45.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 3.6e-87 326.2 383 44.4
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.1e-86 323.2 347 48.7
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 8.9e-86 321.6 378 45.8
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.5e-85 320.9 378 45.8
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 4.4e-85 319.3 378 45.0
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 5.4e-83 312.4 386 45.6
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.1e-80 304.7 427 43.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.6e-79 299.7 332 47.3
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 8.0e-79 298.5 403 42.7
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.6e-77 293.5 305 49.2
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 4.7e-71 272.7 261 52.5
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.4e-69 266.5 292 48.6
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 4.4e-69 266.2 397 40.6
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 6.4e-68 262.3 304 45.7
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 7.1e-67 258.8 317 44.8
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.2e-67 258.5 301 46.5
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 5.1e-65 252.7 230 53.9
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 3.6e-63 246.5 209 55.5
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 3.1e-62 243.4 175 68.6
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 5.2e-62 242.7 256 50.0
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 6.8e-62 242.3 425 37.9
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 2.9e-60 236.9 197 58.9
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 2.9e-52 210.3 398 30.7
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 4.2e-51 206.5 257 40.1
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-50 203.0 171 60.2
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 7.8e-50 202.2 266 42.5
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 2.5e-48 197.2 179 55.9
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 3.9e-41 173.3 202 45.5
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-39 167.5 136 58.1
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 6.9e-38 162.5 197 46.2
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 6.9e-38 162.5 184 50.0
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 1.7e-36 157.9 194 45.4
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.2e-36 157.5 187 49.2
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.7e-33 146.0 328 30.8
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 5.6e-32 142.9 179 45.8
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-28 131.0 282 31.6
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.4e-27 128.3 121 52.1
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 7.1e-27 125.9 165 42.4
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-26 122.9 111 53.2
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-25 121.7 112 52.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 6.7e-25 119.4 257 28.4
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-20 104.4 104 49.0
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.8e-17 92.4 117 41.9
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-16 89.7 117 41.0
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 4.1e-14 83.6 90 48.9
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-09 68.6 88 39.8


User provided reference genes

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