Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.7e-132 476.1 250 100.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.1e-127 459.1 250 94.4
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 6.6e-81 304.7 231 70.1
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.1e-80 303.9 219 71.2
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.4e-78 296.2 237 65.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.5e-77 293.5 238 66.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 9.9e-77 290.8 235 64.7
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.7e-76 290.0 200 75.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.9e-76 289.3 198 75.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 8.4e-76 287.7 236 64.0
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 3.2e-75 285.8 228 62.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 7.1e-75 284.6 208 68.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.0e-73 279.3 202 67.8
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 8.7e-73 277.7 198 69.2
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.5e-72 276.9 206 68.0
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.5e-72 276.9 192 70.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.5e-72 276.2 188 72.9
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 4.3e-72 275.4 231 63.2
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 7.4e-72 274.6 201 69.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 4.8e-71 271.9 237 59.5
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.8e-71 271.9 228 61.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-70 270.8 233 62.7
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.1e-70 270.8 188 70.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.1e-70 270.8 188 70.2
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.1e-70 270.8 181 72.9
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.8e-70 270.0 188 70.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.4e-70 269.6 203 67.0
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.3e-70 268.5 206 69.4
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 9.0e-70 267.7 198 64.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-69 267.3 202 64.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.2e-69 267.3 228 61.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.5e-69 265.4 244 57.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 5.8e-69 265.0 200 66.5
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 5.8e-69 265.0 198 65.7
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.3e-68 263.8 201 67.2
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.2e-68 263.1 231 58.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.4e-67 260.4 187 69.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.9e-67 260.0 180 68.9
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.4e-67 259.6 232 58.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 3.2e-67 259.2 178 71.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.2e-67 259.2 228 61.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 4.2e-67 258.8 233 58.4
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.5e-67 258.5 159 81.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 5.5e-67 258.5 196 66.3
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 5.5e-67 258.5 180 69.4
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.6e-66 256.9 187 69.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.1e-66 256.5 194 66.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.1e-66 256.5 185 68.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 4.6e-66 255.4 219 61.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 7.9e-66 254.6 189 65.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.3e-65 253.8 196 67.3
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.3e-65 253.8 196 67.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.3e-65 253.8 196 67.3
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.3e-65 253.8 181 70.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 182 68.1
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 182 68.1
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.8e-65 253.4 219 61.6
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.8e-65 253.4 178 69.7
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.3e-65 253.1 192 66.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.3e-65 253.1 192 66.7
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 3.0e-65 252.7 191 68.6
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.0e-65 252.7 183 66.7
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 5.1e-65 251.9 182 68.1
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 5.1e-65 251.9 204 63.2
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 6.7e-65 251.5 183 67.8
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.7e-65 251.1 180 68.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.1e-64 250.8 237 57.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-64 250.8 210 62.4
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.9e-64 250.0 180 67.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.5e-64 249.6 195 64.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.3e-64 249.2 180 67.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 3.3e-64 249.2 207 62.8
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 3.3e-64 249.2 207 62.8
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.3e-64 249.2 232 58.6
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 4.3e-64 248.8 228 58.8
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 7.4e-64 248.1 183 67.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 7.4e-64 248.1 231 57.1
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.6e-64 247.7 235 57.4
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.3e-63 247.3 201 63.2
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.8e-63 246.1 181 66.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.7e-63 245.7 157 76.4
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.2e-63 245.0 277 50.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.2e-63 245.0 180 68.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.1e-62 244.2 181 67.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.4e-62 243.8 180 67.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.8e-62 243.4 182 67.0
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.8e-62 243.4 148 81.1
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.4e-62 243.0 183 67.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.4e-62 243.0 190 64.7
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.1e-62 242.7 187 67.9
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.0e-62 242.3 183 62.3
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 5.3e-62 241.9 200 62.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 6.9e-62 241.5 183 66.7
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 6.9e-62 241.5 180 67.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.2e-61 240.7 179 65.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 7.6e-61 238.0 199 60.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.3e-60 237.3 204 60.3
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-60 237.3 228 57.0
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.9e-60 236.1 180 66.1
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.9e-60 236.1 159 73.6
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-59 234.2 147 77.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.5e-59 233.0 212 61.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.2e-59 232.3 142 78.2
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.2e-59 232.3 229 54.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.5e-59 231.9 149 77.2
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 9.3e-59 231.1 146 75.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.2e-58 230.7 140 79.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.6e-58 230.3 167 68.9
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.1e-58 229.9 140 77.9
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.7e-58 229.6 145 74.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.7e-58 229.6 223 57.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 4.6e-58 228.8 139 79.9
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 7.9e-58 228.0 166 71.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.8e-57 226.9 202 55.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.4e-56 221.5 181 60.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.3e-55 220.7 181 62.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.8e-55 219.5 179 59.8
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.8e-55 218.8 179 59.8
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.4e-54 217.2 142 71.8
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.1e-54 215.7 179 58.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-52 209.9 204 53.9
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.1e-51 207.6 160 63.8
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.1e-51 207.6 148 64.9
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 7.9e-50 201.4 122 77.0
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.5e-48 196.4 157 63.1
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.3e-47 194.1 151 62.3
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.4e-46 189.9 158 67.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 6.9e-46 188.3 164 59.8
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 3.4e-45 186.0 139 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.5e-45 185.7 140 61.4
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.9e-45 185.3 143 61.5
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.7e-44 183.7 157 59.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 5.0e-44 182.2 196 54.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 5.0e-44 182.2 136 65.4
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.9e-43 180.3 139 60.4
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.8e-41 173.7 232 47.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 7.7e-37 158.3 117 70.1
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.5e-36 154.8 206 43.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 6.7e-33 145.2 180 47.2
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 8.8e-33 144.8 142 58.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 6.3e-31 138.7 144 55.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.6e-29 134.0 126 55.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.2e-26 124.4 111 57.7
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-26 123.6 155 48.4
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.7e-23 114.0 79 64.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.1e-18 95.5 140 37.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 8.8e-17 91.7 147 34.7
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 5.4e-14 82.4 131 34.4
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.3e-12 77.0 151 35.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.8e-12 76.3 151 32.5
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-11 73.9 67 55.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.1e-10 68.9 170 30.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.0e-09 66.6 120 31.7
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.4e-08 63.2 84 47.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 4.4e-08 62.8 83 47.0
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 1.3e-07 61.2 80 47.5


User provided reference genes

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