Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3682 Papaver somniferum HOM05D006606 ORTHO05D008429 2.6e-47 191.8 103 100.0
PSO017G6954 Papaver somniferum HOM05D006606 ORTHO05D008429 4.6e-12 74.7 39 87.2
PSO675G4216 Papaver somniferum HOM05D006606 ORTHO05D008429 4.6e-12 74.7 39 87.2
Nn1g09788 Nelumbo nucifera HOM05D006606 ORTHO05D008429 6.6e-11 70.9 39 79.5
HPP92_024552 Vanilla planifolia HOM05D006606 ORTHO05D008429 6.6e-11 70.9 36 83.3
AUR62018480 Chenopodium quinoa HOM05D006606 ORTHO05D008429 8.7e-11 70.5 36 83.3
AUR62020943 Chenopodium quinoa HOM05D006606 ORTHO05D008429 8.7e-11 70.5 36 83.3
Sabra14G0110300 Salix brachista HOM05D006606 ORTHO05D008429 8.7e-11 70.5 39 76.9
ClCG07G015730 Citrullus lanatus HOM05D006606 ORTHO05D008429 1.1e-10 70.1 38 78.9
Cc03_g10820 Coffea canephora HOM05D006606 ORTHO05D008429 1.1e-10 70.1 38 78.9
DCAR_023800 Daucus carota HOM05D006606 ORTHO05D008429 1.1e-10 70.1 38 78.9
Ah.04g149880 Amaranthus hybridus HOM05D006606 ORTHO05D008429 1.5e-10 69.7 36 83.3
Cfa008709 Carpinus fangiana HOM05D006606 ORTHO05D008429 1.5e-10 69.7 36 83.3
Haze_11718 Corylus avellana HOM05D006606 ORTHO05D008429 1.5e-10 69.7 36 83.3
MELO3C017709.2 Cucumis melo HOM05D006606 ORTHO05D008429 1.5e-10 69.7 36 83.3
CsaV3_4G003370 Cucumis sativus L. HOM05D006606 ORTHO05D008429 1.5e-10 69.7 36 83.3
Lj3A357T51 Lonicera japonica HOM05D006606 ORTHO05D008429 1.5e-10 69.7 38 76.3
Lj3A376T54 Lonicera japonica HOM05D006606 ORTHO05D008429 1.5e-10 69.7 38 76.3
Lalb_Chr23g0278211 Lupinus albus HOM05D006606 ORTHO05D008429 1.5e-10 69.7 38 76.3
Os12g0405200 Oryza sativa ssp. japonica HOM05D006606 ORTHO05D008429 1.5e-10 69.7 37 78.4
QL10p044478 Quercus lobata HOM05D006606 ORTHO05D008429 1.5e-10 69.7 38 78.9
SGA_v2.0_scaffold178G39486 Striga asiatica HOM05D006606 ORTHO05D008429 1.5e-10 69.7 36 80.6
GSVIVG01031662001 Vitis vinifera HOM05D006606 ORTHO05D008429 1.5e-10 69.7 37 78.4
Actinidia28936 Actinidia chinensis HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
COL.COLO4_38511 Corchorus olitorius HOM05D006606 ORTHO05D008429 1.9e-10 69.3 52 65.4
Gohir.A02G065800 Gossypium hirsutum HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
Gohir.D02G071700 Gossypium hirsutum HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
Gorai.005G080900 Gossypium raimondii HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
Hma1.2p1_1286F.1_g273130 Hydrangea macrophylla HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
PGR119G1918 Punica granatum HOM05D006606 ORTHO05D008429 1.9e-10 69.3 38 76.3
Sed0006939 Sechium edule HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
Sc19g0007700 Simmondsia chinensis HOM05D006606 ORTHO05D008429 1.9e-10 69.3 36 80.6
EL10Ac3g07392 Beta vulgaris HOM05D006606 ORTHO05D008429 2.5e-10 68.9 36 80.6
CSS0008381 Camellia sinensis var. sinensis HOM05D006606 ORTHO05D008429 2.5e-10 68.9 38 78.9
CSS0041194 Camellia sinensis var. sinensis HOM05D006606 ORTHO05D008429 2.5e-10 68.9 38 78.9
Dinv22706 Davidia involucrata HOM05D006606 ORTHO05D008429 2.5e-10 68.9 38 76.3
CANSAT78G0692 Cannabis sativa HOM05D006606 ORTHO05D008429 3.3e-10 68.6 36 77.8
Rhsim02G0071700 Rhododendron simsii HOM05D006606 ORTHO05D008429 3.3e-10 68.6 36 80.6
Thecc.08G146500 Theobroma cacao HOM05D006606 ORTHO05D008429 3.3e-10 68.6 36 80.6
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 4.3e-10 68.2 37 78.4
arahy.Tifrunner.gnm1.ann1.B1TKD1 Arachis hypogaea HOM05D006606 ORTHO05D008429 5.6e-10 67.8 38 76.3
Lj4g0003716 Lotus japonicus HOM05D006606 ORTHO05D008429 5.6e-10 67.8 50 64.0
Potri.014G146900 Populus trichocarpa HOM05D006606 ORTHO05D008429 5.6e-10 67.8 39 71.8
Prupe.1G177500 Prunus persica HOM05D006606 ORTHO05D008429 5.6e-10 67.8 36 77.8
Aqoxy2G04062 Aquilegia oxysepala HOM05D006606 ORTHO05D008429 7.3e-10 67.4 36 77.8
Ca_18015_v3 Cicer arietinum L. HOM05D006606 ORTHO05D008429 7.3e-10 67.4 38 76.3
Glyma.11G252500 Glycine max HOM05D006606 ORTHO05D008429 7.3e-10 67.4 36 80.6
Glyma.18G004400 Glycine max HOM05D006606 ORTHO05D008429 7.3e-10 67.4 36 80.6
Lalb_Chr11g0075821 Lupinus albus HOM05D006606 ORTHO05D008429 7.3e-10 67.4 38 73.7
MD04G1028100 Malus domestica HOM05D006606 ORTHO05D008429 7.3e-10 67.4 36 77.8
CAN.G484.128 Capsicum annuum HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
CiPaw.03G116300 Carya illinoinensis HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
Duzib041G0430 Durio zibethinus HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 72.2
Nitab4.5_0000978g0190 Nicotiana tabacum HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
Nitab4.5_0006519g0030 Nicotiana tabacum HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
Peaxi162Scf00378g00631 Petunia axillaris HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
Solyc12g098710.2 Solanum lycopersicum HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
PGSC0003DMG401004586 Solanum tuberosum HOM05D006606 ORTHO05D008429 9.6e-10 67.0 36 75.0
arahy.Tifrunner.gnm1.ann1.V8KL47 Arachis hypogaea HOM05D006606 ORTHO05D008429 1.3e-09 66.6 38 73.7
FvH4_4g12260 Fragaria vesca HOM05D006606 ORTHO05D008429 1.3e-09 66.6 36 77.8
FAN12G1058 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.3e-09 66.6 36 77.8
FAN12G2609 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.3e-09 66.6 36 77.8
FAN17G1362 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.3e-09 66.6 36 77.8
FAN22G0658 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.3e-09 66.6 36 77.8
RcHm_v2.0_Chr4g0410061 Rosa chinensis HOM05D006606 ORTHO05D008429 1.3e-09 66.6 36 77.8
TAR362G1133 Trochodendron aralioides HOM05D006606 ORTHO05D008429 1.3e-09 66.6 39 69.2
FAN07G1739 Fragaria x ananassa HOM05D006606 ORTHO05D008429 1.6e-09 66.2 36 75.0
Lsat_1_v5_gn_2_48240 Lactuca sativa HOM05D006606 ORTHO05D008429 1.6e-09 66.2 38 71.1
unitig_22.g6833 Utricularia gibba HOM05D006606 ORTHO05D008429 1.6e-09 66.2 38 71.1
Atru.chr3.1730 Acer truncatum HOM05D006606 ORTHO05D008429 2.1e-09 65.9 36 72.2
Migut.N00458 Erythranthe guttata HOM05D006606 ORTHO05D008429 2.1e-09 65.9 36 72.2
HanXRQChr10g0293961 Helianthus annuus HOM05D006606 ORTHO05D008429 2.1e-09 65.9 37 75.7
Medtr3g084950 Medicago truncatula HOM05D006606 ORTHO05D008429 2.1e-09 65.9 36 77.8
VMungo1383G1705 Vigna mungo HOM05D006606 ORTHO05D008429 2.1e-09 65.9 37 75.7
Ca_16442_v3 Cicer arietinum L. HOM05D006606 ORTHO05D008429 2.8e-09 65.5 36 75.0
Ciclev10020648m.g Citrus clementina HOM05D006606 ORTHO05D008429 2.8e-09 65.5 37 70.3
Oeu013395.1 Olea europaea HOM05D006606 ORTHO05D008429 2.8e-09 65.5 36 72.2
SalBow6G4530 Salvia bowleyana HOM05D006606 ORTHO05D008429 2.8e-09 65.5 36 75.0
TPR.G18107 Trifolium pratense HOM05D006606 ORTHO05D008429 2.8e-09 65.5 36 75.0
TWI09G1191 Tripterygium wilfordii HOM05D006606 ORTHO05D008429 2.8e-09 65.5 36 75.0
MSTRG.21987 Avicennia marina HOM05D006606 ORTHO05D008429 3.6e-09 65.1 36 75.0
Thhalv10007996m.g Eutrema salsugineum HOM05D006606 ORTHO05D008429 4.8e-09 64.7 36 72.2
Medtr8g097190 Medicago truncatula HOM05D006606 ORTHO05D008429 4.8e-09 64.7 38 71.1
Phvul.001G263600 Phaseolus vulgaris HOM05D006606 ORTHO05D008429 4.8e-09 64.7 36 75.0
THA.LOC104823658 Tarenaya hassleriana HOM05D006606 ORTHO05D008429 4.8e-09 64.7 36 75.0
Zm00001eb408760 Zea mays HOM05D006606 ORTHO05D008429 4.8e-09 64.7 37 73.0
ATR0561G173 Amborella trichopoda HOM05D006606 ORTHO05D008429 1.1e-08 63.5 36 72.2
Cpa.g.sc8.304 Carica papaya HOM05D006606 ORTHO05D008429 1.1e-08 63.5 36 72.2
Eucgr.C03850 Eucalyptus grandis HOM05D006606 ORTHO05D008429 1.1e-08 63.5 38 68.4
Oeu007220.2 Olea europaea HOM05D006606 ORTHO05D008429 1.1e-08 63.5 36 72.2
Psat7g076840 Pisum sativum HOM05D006606 ORTHO05D008429 1.1e-08 63.5 38 68.4
Sp1g09530 Schrenkiella parvula HOM05D006606 ORTHO05D008429 1.1e-08 63.5 36 69.4
AL1G21760 Arabidopsis lyrata HOM05D006606 ORTHO05D008429 1.4e-08 63.2 36 69.4
AT1G10830 Arabidopsis thaliana HOM05D006606 ORTHO05D008429 1.4e-08 63.2 36 69.4
Carub.0001s1037 Capsella rubella HOM05D006606 ORTHO05D008429 1.4e-08 63.2 36 69.4
CARHR011050 Cardamine hirsuta HOM05D006606 ORTHO05D008429 1.4e-08 63.2 36 69.4
Aa31LG1G4020 Aethionema arabicum HOM05D006606 ORTHO05D008429 4.0e-08 61.6 48 56.2
BcaC05g24964 Brassica carinata HOM05D006606 ORTHO05D008429 4.0e-08 61.6 36 66.7
A06p07610 Brassica napus HOM05D006606 ORTHO05D008429 4.0e-08 61.6 36 66.7
C05p09200 Brassica napus HOM05D006606 ORTHO05D008429 4.0e-08 61.6 36 66.7
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.0e-08 61.6 36 66.7
BraA06t23963Z Brassica rapa HOM05D006606 ORTHO05D008429 4.0e-08 61.6 36 66.7
Mapoly0040s0091 Marchantia polymorpha HOM05D006606 ORTHO05D008429 9.0e-08 60.5 37 62.2
Mapoly0040s0092 Marchantia polymorpha HOM05D006606 ORTHO05D008429 1.2e-07 60.1 37 62.2
SMO270G0095 Selaginella moellendorffii HOM05D006606 ORTHO05D008429 1.2e-07 60.1 38 63.2
Pp3c17_7640 Physcomitrium patens HOM05D006606 ORTHO05D008429 5.8e-07 57.8 68 44.1
Pp3c1_22590 Physcomitrium patens HOM05D006606 ORTHO05D008429 7.6e-07 57.4 37 59.5
SEGI_35229 Sequoiadendron giganteum HOM05D006606 ORTHO05D008429 3.8e-06 55.1 37 51.4
CBR_g17600 Chara braunii HOM05D006606 ORTHO05D008429 4.9e-06 54.7 36 55.6


User provided reference genes

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